CATH Domain: 1zdnA00 XML data for domain: 1zdnA00

Molscript image for 1zdnA00
1zdnA00
PDB coordinates for domain 1zdnA00

PDB 1zdn, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.110 Ubiquitin Conjugating Enzyme
3.10.110.10 Ubiquitin Conjugating Enzyme Gene3D
3.10.110.10.4
3.10.110.10.4.1
3.10.110.10.4.1.1
3.10.110.10.4.1.1.1
3.10.110.10.4.1.1.1.1

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Segment boundaries for domain 1zdnA00

Chopping figure for domain 1zdnA00
DomainStart PDB ResidueStop PDB Residue
1zdnA00 6 156

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.10.110.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wzvA00 88.70 Parkinson's diseaseUbiquitin-conjugating enzyme E2 L6 [EC:6.3.2.19]Homo sapiensUbiquitin mediated proteolysisProtein binding 3.10.110.10 150 25 95 2.05 2.15
2e2cA00 87.80 Ubiquitin-conjugating enzyme E2 CSpisula solidissima 3.10.110.10 156 30 96 3.51 3.65
3h8kA00 87.21 Parkinson's diseaseUbiquitin mediated proteolysisUbiquitin-conjugating enzyme E2 G2 [EC:6.3.2.19]Homo sapiensProtein binding 3.10.110.10 164 28 90 1.81 2.01
1br7003 85.01 3.10.110.10 117 34 77 1.88 2.43
2a4dA00 84.05 Protein polyubiquitinationUbiquitin-conjugating enzyme E2 variantNucleusUbiquitin-conjugating enzyme E2 variant 1Ubiquitin conjugating enzyme complex 3.10.110.10 139 20 84 2.45 2.89
1s1qA00 79.53 EndocytosisMultivesicular bodyPlasma membraneNucleolusTumor susceptibility gene 101 protein 3.10.110.10 137 13 75 3.20 4.24
3cegA00 74.70 Anti-apoptosisHomo sapiensBaculoviral IAP repeat-containing protein 6Protein binding 3.10.110.10 285 26 49 2.49 5.00
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1zdnA00
ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH
PNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1zdnA00
GSMNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGY
FLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 05 Nov 2006 09:26

Assigning to "3.10.110.10" based on similarity with "1jatA00"

Flow stage update by auto on 05 Nov 2006 09:22

No in_process hits for Domain "1zdnA00" ready to be processed

Flow stage update by auto on 05 Nov 2006 09:22

NW result present for Domain "1zdnA00"

Flow stage update by auto on 02 Nov 2006 14:23

All required files are present for Domain "1zdnA00"

Flow stage update by auto on 01 Nov 2006 18:02

Beginning processing for Domain "1zdnA00"

Insertion by auto on 01 Nov 2006 17:29

Final ChopClose added based on similarity with "1zdnB"