CATH Domain: 1zd8A00 XML data for domain: 1zd8A00

Molscript image for 1zd8A00
1zd8A00
PDB coordinates for domain 1zd8A00

PDB 1zd8, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.300 P-loop containing nucleotide triphosphate hydrolases Gene3D
3.40.50.300.7
3.40.50.300.7.1
3.40.50.300.7.1.1
3.40.50.300.7.1.1.1
3.40.50.300.7.1.1.1.1

Segment boundaries for domain 1zd8A00

Chopping figure for domain 1zd8A00
DomainStart PDB ResidueStop PDB Residue
1zd8A00 6 217

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.40.50.300.7.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2c95A00 85.62 Adenylate kinase isoenzyme 1Purine metabolismNucleusProtein bindingMetabolic pathways 3.40.50.300 195 26 86 3.80 4.40
1qf9A00 83.84 Pyrimidine base salvagePyrimidine metabolismPhosphotransferase activity, phosphate group as acceptorCDP biosynthetic processMetabolic pathways 3.40.50.300 194 26 86 4.07 4.69
2xb4A00 82.54 Desulfovibrio gigasAdenylate kinase 3.40.50.300 223 27 89 4.39 4.89
3h0kA00 80.34 Sulfolobus solfataricusUPF0200 protein SSO1041 3.40.50.300 171 17 76 2.80 3.64
1nn3A00 78.77 Thymidylate kinaseCell cycleThymidylate kinase activityHomo sapiensCell proliferation 3.40.50.300 209 8 79 3.55 4.48
1y63A00 77.61 Leishmania majorPutative uncharacterized protein 3.40.50.300 168 14 73 3.14 4.29
2wwfA00 77.33 Pyrimidine metabolismMetabolic pathwaysPlasmodium falciparum 3D7Thymidylate kinase, putativeDTMP kinase [EC:2.7.4.9] 3.40.50.300 211 12 76 3.65 4.75
1khtB00 77.30 Adenylate kinaseMethanococcus voltae 3.40.50.300 191 9 79 3.80 4.77
2grjA00 77.11 Thermotoga maritimaDephospho-CoA kinase [EC:2.7.1.24]Pantothenate and CoA biosynthesisDephospho-CoA kinaseMetabolic pathways 3.40.50.300 175 11 68 3.19 4.66
2if2A00 76.88 Dephospho-CoA kinase [EC:2.7.1.24]Pantothenate and CoA biosynthesisDephospho-CoA kinaseMetabolic pathwaysAquifex aeolicus 3.40.50.300 190 14 75 3.76 4.95
1knqA00 76.76 Pentose phosphate pathwayMetabolic pathwaysThermoresistant gluconokinaseGluconokinase activityGluconokinase [EC:2.7.1.12] 3.40.50.300 171 14 74 3.09 4.17
1uf9A00 75.53 Pantothenate and CoA biosynthesisMetabolic pathwaysThermus thermophilus HB8Dephospho-CoA kinase [EC:2.7.1.24]Dephospho-CoA kinase 3.40.50.300 188 13 77 3.66 4.70
1qhxA00 75.07 Streptomyces violaceusChloramphenicol 3-O phosphotransferase 3.40.50.300 178 10 73 3.61 4.91
1dekA01 73.35 Deoxynucleotide monophosphate kinaseEnterobacteria phage T4 3.40.50.300 118 11 52 2.48 4.74
Displaying entries 1 to 14 (page 1 of 1)


Domain ATOM Sequence

>pdb|1zd8A00
LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYS
WLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKP
ETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQ    

Domain COMBS Sequence

>pdb|1zd8A00
MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELK
NLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQ
REDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRSQKASVTP    

Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:12

Assigning to "3.40.50.300" based on similarity with "2ak3A00" (NWSI: 92.4778761061947, NWO: 99.5594713656388, SPS: 94.84, SPO: 93, RMSD: 0.90)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1zd8A00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "1zd8A00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1zd8A00"

Insertion by auto on 10 Mar 2006 08:00

Final ChopClose added based on similarity with "2ak3A" [LEE: 0, LME: 0, MR: 9, LG: 9, SS: 94.84, SI: 92.4778761061947, SO: 99.5594713656388]