CATH Domain: 1z5bB03 XML data for domain: 1z5bB03

Molscript image for 1z5bB03
1z5bB03
PDB coordinates for domain 1z5bB03

PDB 1z5b, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.230 Ribosomal Protein S5; domain 2
3.30.230.10 Gene3D
3.30.230.10.9
3.30.230.10.9.1
3.30.230.10.9.1.1
3.30.230.10.9.1.1.1
3.30.230.10.9.1.1.1.1

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Segment boundaries for domain 1z5bB03

Chopping figure for domain 1z5bB03
DomainStart PDB ResidueStop PDB Residue
1z5bB01 4 220
1z5bB02 230 307
1z5bB03 315 463

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.30.230.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2zbkB03 87.05 Type 2 DNA topoisomerase 6 subunit BSulfolobus shibatae 3.30.230.10 212 99 70 1.20 1.71
3cwvA02 79.92 Myxococcus xanthus DK 1622DNA gyrase, B subunit, truncated 3.30.230.10 151 8 85 3.92 4.59
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1z5bB03
SVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWKVVEE
LDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1z5bB03
SVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWKVVEE
LDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:06

Assigning to "3.30.230.10" based on similarity with "1mu5A03" (NWSI: 100, NWO: 100, SPS: 95.63, SPO: 95, RMSD: 0.81)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1z5bB03"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "1z5bB03"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1z5bB03"

Insertion by auto on 10 Mar 2006 06:38

Final ChopClose added based on similarity with "1z5aA" [LEE: 0, LME: 0, MR: 6, LG: 6, SS: 96.49, SI: 100, SO: 100]