CATH Domain: 1z3eB00 XML data for domain: 1z3eB00

Molscript image for 1z3eB00
1z3eB00
PDB coordinates for domain 1z3eB00

PDB 1z3e, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.1
1.10.150.20.1.1
1.10.150.20.1.1.1
1.10.150.20.1.1.1.1
1.10.150.20.1.1.1.1.1

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Segment boundaries for domain 1z3eB00

Chopping figure for domain 1z3eB00
DomainStart PDB ResidueStop PDB Residue
1z3eB00 245 311

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 1.10.150.20.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lb2B00 92.54 Pyrimidine metabolismPurine metabolismRNA polymeraseMetabolic pathwaysDNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 1.10.150.20 72 40 91 0.90 0.98
1y88A02 87.68 Archaeoglobus fulgidusUncharacterized protein AF_1548 1.10.150.20 59 23 88 3.47 3.94
3kkaD00 85.44 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 13 95 3.23 3.38
1szpA01 84.46 DNA repair protein RAD51Identical protein bindingDouble-strand break repair via homologous recombinationHeteroduplex formationDNA-dependent ATPase activity 1.10.150.20 72 13 86 3.13 3.63
1wcnA01 84.40 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 13 88 3.25 3.69
1dxsA00 84.37 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 14 80 1.90 2.36
1jx4A03 83.53 DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]DNA polymerase IVSulfolobus solfataricus 1.10.150.20 66 13 89 3.06 3.42
1v38A00 82.77 Mus musculusSAM domain-containing protein SAMSN-1 1.10.150.50 78 17 83 4.13 4.96
1x9xA00 82.76 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 4 88 2.88 3.27
3h8mA00 81.57 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 11 92 4.39 4.72
2z43B01 81.01 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 64 12 79 3.50 4.42
2q0zX02 80.84 ATP-dependent helicase activityPre-mRNA-splicing helicase BRR2 [EC:3.6.1.-]Protein bindingU5 small nuclear ribonucleoprotein 200 kDa helicaseU5 snRNP 1.10.150.20 56 7 82 3.97 4.84
1pk3A00 80.74 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 16 81 2.90 3.55
2dflA01 80.50 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 18 88 3.61 4.10
1z1vA00 79.92 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 11 85 3.37 3.93
1x66A01 79.31 Sequence-specific DNA binding transcription factor activityHemostasisOrgan morphogenesisHomo sapiensFriend leukemia integration 1 transcription factor 1.10.150.50 70 10 88 3.86 4.36
1oxjA01 77.79 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.10.150.50 61 16 91 4.07 4.47
2ztdA02 76.27 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 10 91 4.20 4.61
1ji7A00 70.26 Protein domain specific bindingETS translocation variant 6/7NucleolusDorso-ventral axis formationTranscription factor ETV6 1.10.150.50 76 5 46 2.22 4.82
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1z3eB00
KEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1z3eB00
MEKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDDG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 20 Jul 2007 16:18

Assigning to "1.10.150.20" based on similarity with "1doqA00"

Flow stage update by auto on 20 Jul 2007 15:37

No in_process hits for Domain "1z3eB00" ready to be processed

Flow stage update by auto on 20 Jul 2007 15:36

NW result present for Domain "1z3eB00"

Flow stage update by auto on 14 Jul 2007 06:01

All required files are present for Domain "1z3eB00"

Flow stage update by auto on 13 Jul 2007 18:42

Beginning processing for Domain "1z3eB00"

Insertion by auto on 13 Jul 2007 02:36

Final ChopClose added based on similarity with "1doqA"