CATH Domain: 1yyqB00 XML data for domain: 1yyqB00

Molscript image for 1yyqB00
1yyqB00
PDB coordinates for domain 1yyqB00

PDB 1yyq, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.600 Farnesyl Diphosphate Synthase
1.10.600.10 Farnesyl Diphosphate Synthase Gene3D
1.10.600.10.7
1.10.600.10.7.1
1.10.600.10.7.1.1
1.10.600.10.7.1.1.1
1.10.600.10.7.1.1.1.1

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Segment boundaries for domain 1yyqB00

Chopping figure for domain 1yyqB00
DomainStart PDB ResidueStop PDB Residue
1yyqB00 4 354

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1yyqB00
FPTEYFLNTTVRLLEYIRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSWAKVSK
ECMADLSIHYTYTLVLDDSKDDPYPTMVNYFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWI
EQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISL
VKNYVVSDEISLHEALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIECFMHGYVTWHLCDRRFRLSEIYEKVKEEKTEDAQ
KFCKFYEQAANVGAVSPSEWAYPPVAQLANV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yyqB00
MENFPTEYFLNTTVRLLEYIRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSWAK
VSKECMADLSIHYTYTLVLDDSKDDPYPTMVNYFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEG
CWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQ
ISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIECFMHGYVTWHLCDRRFRLSEIYEKVKEEKTE
DAQKFCKFYEQAANVGAVSPSEWAYPPVAQLANV
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:01

Assigning to "1.10.600.10" based on similarity with "1yj4A00" (NWSI: 100, NWO: 100, SPS: 95.46, SPO: 99, RMSD: 1.38)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1yyqB00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "1yyqB00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1yyqB00"

Insertion by auto on 10 Mar 2006 06:00

Final ChopClose added based on similarity with "1yj4A" [LEE: 0, LME: 0, MR: 3, LG: 3, SS: 95.46, SI: 100, SO: 100]