CATH Domain: 1ytqA01 XML data for domain: 1ytqA01

Molscript image for 1ytqA01
1ytqA01
PDB coordinates for domain 1ytqA01

PDB 1ytq, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.20 Gamma-B Crystallin; domain 1
2.60.20.10 Crystallins Gene3D
2.60.20.10.6
2.60.20.10.6.1
2.60.20.10.6.1.1
2.60.20.10.6.1.1.1
2.60.20.10.6.1.1.1.1

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Segment boundaries for domain 1ytqA01

Chopping figure for domain 1ytqA01
DomainStart PDB ResidueStop PDB Residue
1ytqA01 16 101
1ytqA02 102 193

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.60.20.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1npsA00 87.93 Myxococcus xanthusDevelopment-specific protein S 2.60.20.10 87 25 91 2.22 2.41
3hzbC00 87.92 Predicted carbohydrate binding proteinFlavobacterium johnsoniae UW101 2.60.20.10 88 22 92 2.31 2.51
1hdfA00 86.47 Spherulin-3APhysarum polycephalum 2.60.20.10 99 16 82 2.27 2.74
1c01A00 80.51 Macadamia integrifoliaAntimicrobial peptide 1 2.60.20.30 76 10 81 2.54 3.12
1wktA00 79.41 Killer toxin HM-1Williopsis saturnus var. mrakii 2.60.20.20 87 11 83 3.03 3.61
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ytqA01
PKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSS
LRPIKV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ytqA01
PKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSS
LRPIKV
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:59

Assigning to "2.60.20.10" based on similarity with "1blbC01" (NWSI: 97.029702970297, NWO: 100, SPS: 93.83, SPO: 100, RMSD: 0.92)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1ytqA01"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1ytqA01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1ytqA01"

Insertion by auto on 15 Mar 2006 01:32

Final ChopClose added based on similarity with "1blbC" [LEE: 0, LME: 0, MR: 6, LG: 6, SS: 89.55, SI: 96.078431372549, SO: 100]