CATH Domain: 1ysaC00 XML data for domain: 1ysaC00

Molscript image for 1ysaC00
1ysaC00
PDB coordinates for domain 1ysaC00

PDB 1ysa, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.19
3.30.160.60.19.1
3.30.160.60.19.1.2
3.30.160.60.19.1.2.2
3.30.160.60.19.1.2.2.1

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Segment boundaries for domain 1ysaC00

Chopping figure for domain 1ysaC00
DomainStart PDB ResidueStop PDB Residue
1ysaC00 225 281

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.30.160.60.19.1.2.2.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1czqA00 84.70 1.20.5.170 45 13 72 2.55 3.51
1gl2A00 84.45 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 11 83 3.70 4.42
1ik7A00 84.17 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 9 83 3.88 4.64
1jocA01 82.32 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 12 71 2.25 3.14
3b5nJ00 81.66 Cellular membrane fusionSNARE complexPhosphatidylinositol-3,5-bisphosphate bindingSyntaxin 1B/2/3Prospore membrane 1.20.5.110 64 1 50 0.69 1.38
1ifpA00 80.08 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 6 76 3.29 4.31
1l4aA00 79.08 SynaptobrevinLoligo pealei 1.20.5.110 66 7 62 2.96 4.76
3efgA00 78.87 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 67 2.72 4.04
1yuiA00 78.86 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 14 56 1.96 3.48
2adrA01 77.46 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 37 50 1.43 2.81
1x5wA01 77.45 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 17 47 1.32 2.79
1bboA02 76.38 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 19 50 1.97 3.87
1tf3A01 75.01 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 16 47 1.21 2.56
2kncB00 74.42 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.100 79 7 59 2.90 4.87
3bidA01 74.36 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 4 49 1.43 2.91
1kyqA02 74.13 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 8 47 1.34 2.83
1pjqA02 70.48 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 8 45 1.45 3.19
1bbgA00 69.03 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 2 40 1.66 4.15
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ysaC00
KDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ysaC00
MKDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
BLAST against CATH

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Domain History Events (4)

Domain move by cuff on 16 Jun 2009 16:07

COMMENT: move 1llmD02 -> 3.30.160.60. homologous. both zinc fingers. confirmed by SCOP FINAL: move 1llmD02 -> 3.30.160.60.

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"