CATH Domain: 1yrrA01

1yrrA01

PDB 1yrr, Chain A, Domain 1

CATH Code	Level Description	Links
2	Mainly Beta
2.30	Roll
2.30.40	Urease, subunit C; domain 1
2.30.40.10	Urease, subunit C, domain 1	Gene3D
2.30.40.10.12
2.30.40.10.12.1
2.30.40.10.12.1.1
2.30.40.10.12.1.1.1
2.30.40.10.12.1.1.1.1

Structure
Sequence
History

[top]
Segment boundaries for domain 1yrrA01

Domain	Start PDB Residue	Stop PDB Residue
1yrrA01	1	54
1yrrA01	345	382
1yrrA02	55	280
1yrrA02	281	344

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.30.40.10.12.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
2vhlB01	90.03	Amino sugar and nucleotide sugar metabolismN-acetylglucosamine-6-phosphate deacetylaseBacillus subtilisN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]	2.30.40.10	92	22	92	1.80	1.95
2qs8A01	87.60		2.30.40.10	99	17	87	2.59	2.95
3feqA01	87.07		2.30.40.10	105	23	85	2.06	2.40
3be7A01	86.62		2.30.40.10	95	15	86	2.18	2.53
1gkrA01	86.00	L-hydantoinaseArthrobacter aurescens	2.30.40.10	87	13	86	2.25	2.59
1o12A01	85.72	Amino sugar and nucleotide sugar metabolismThermotoga maritimaN-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]	2.30.40.10	72	22	78	3.07	3.92
2qt3A01	85.39	N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP	2.30.40.10	100	16	83	2.05	2.47
2icsA01	84.27	Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein	2.30.40.10	100	22	78	2.34	3.00
2pajA01	84.05		2.30.40.10	119	17	73	2.40	3.25
2imrA01	81.36	Uncharacterized protein DR_0824Deinococcus radiodurans	2.30.40.10	69	13	69	2.59	3.72
1gkrB01	81.09	L-hydantoinaseArthrobacter aurescens	2.30.40.10	130	17	67	2.18	3.22
2oodA01	80.46	Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways	2.30.40.10	135	23	60	1.43	2.35
1ejxC01	74.07	Arginine and proline metabolismKlebsiella aerogenesPurine metabolismUrease alpha subunit [EC:3.5.1.5]Atrazine degradation	2.30.40.10	185	19	45	1.86	4.10

[top]
Domain ATOM Sequence

>pdb|1yrrA01
MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGVEKRLGTLAAGKVANLTAFTPDFKIT
KTIVNGNEVVTQ

BLAST against CATH

[top]
Domain COMBS Sequence

>pdb|1yrrA01
MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGVEKRLGTLAAGKVANLTAFTPDFKIT
KTIVNGNEVVTQ

BLAST against CATH

[top]
Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:15

Assigning to "2.30.40.10" based on similarity with "1ymyA01"