CATH Domain: 1yroB00 XML data for domain: 1yroB00

Molscript image for 1yroB00
1yroB00
PDB coordinates for domain 1yroB00

PDB 1yro, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.550 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A Gene3D
3.90.550.10.2
3.90.550.10.2.1
3.90.550.10.2.1.2
3.90.550.10.2.1.2.1
3.90.550.10.2.1.2.1.1

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Segment boundaries for domain 1yroB00

Chopping figure for domain 1yroB00
DomainStart PDB ResidueStop PDB Residue
1yroB00 131 402

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1yroB00
LTACPEESPLLVGPMLIEFNIPVDLKLVEQQNPKVKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQ
LDYGIYVINQAGESMFNKAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLPYVQYF
GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETM
LSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yroB00
ASMTGGQQMGRGSSLTACPEESPLLVGPMLIEFNIPVDLKLVEQQNPKVKLGGRYTPMDCISPHKVAIIIPFRNRQEHLK
YWLYYLHPILQRQQLDYGIYVINQAGESMFNKAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVA
MDKFGFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPN
PQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:57

Assigning to "3.90.550.10" based on similarity with "1nmmB00" (NWSI: 99.6503496503497, NWO: 100, SPS: 98.10, SPO: 100, RMSD: 0.33)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1yroB00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1yroB00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1yroB00"

Insertion by auto on 10 Mar 2006 04:06

Final ChopClose added based on similarity with "1nmmB" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 98.10, SI: 99.6503496503497, SO: 100]