CATH Domain: 1yrnA00 XML data for domain: 1yrnA00

Molscript image for 1yrnA00
1yrnA00
PDB coordinates for domain 1yrnA00

PDB 1yrn, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.34
1.10.10.60.34.1
1.10.10.60.34.1.1
1.10.10.60.34.1.1.2
1.10.10.60.34.1.1.2.2

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Segment boundaries for domain 1yrnA00

Chopping figure for domain 1yrnA00
DomainStart PDB ResidueStop PDB Residue
1yrnA00 77 125

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 1.10.10.60.34.1.1.2.2 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o4xA02 94.55 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 29 96 1.08 1.12
2dmqA01 91.41 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 23 87 2.04 2.33
1b72A00 89.15 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 25 75 1.65 2.20
1nk3P00 88.47 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 31 80 1.58 1.95
1pufB00 87.41 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 41 69 1.70 2.43
1tc3C00 86.56 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 17 90 4.30 4.77
1lfbA00 86.51 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 25 66 0.97 1.46
1wjhA00 85.25 1.10.10.60 76 15 67 1.95 2.91
1le8B00 84.83 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 19 68 2.03 2.95
1ic8A02 84.24 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 25 68 1.67 2.42
1mnmC00 84.08 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 21 64 1.70 2.62
1gdtB03 83.95 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 8 82 3.13 3.80
1rr7A02 83.60 Middle operon regulatorEnterobacteria phage Mu 1.10.10.60 48 10 92 4.17 4.52
1umqA00 82.77 Rhodobacter sphaeroides 2.4.1Photosynthetic apparatus regulatory protein regA 1.10.10.60 60 5 75 3.41 4.55
2raeA01 82.53 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 16 80 3.76 4.68
1bobA03 82.24 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 11 94 3.83 4.06
3bqzA01 82.08 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 6 88 3.36 3.81
1iv6A00 81.30 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 11 89 3.57 3.99
2k9nA02 81.28 MYB24Trichomonas vaginalis 1.10.10.60 54 5 88 3.65 4.11
2dflA01 80.29 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 11 80 3.62 4.53
1irzA00 79.18 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 7 79 3.06 3.84
1q1vA00 78.60 NucleusSignal transductionProtein DEKViral genome replicationSpecific RNA polymerase II transcription factor activity 1.10.10.60 70 1 72 3.32 4.56
1fexA00 77.70 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 3 81 3.35 4.12
1wcnA01 77.30 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 11 85 4.15 4.88
1ng6A02 76.85 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 3 84 4.11 4.88
1s7eA02 74.27 One cut domain, family member 1, hepatocyte nuclear factor 6Endoderm developmentPositive regulation of gene-specific transcription from RNA polymerase II promoterEndocrine pancreas developmentRegulation of cell-matrix adhesion 1.10.10.60 74 15 63 2.78 4.38
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yrnA00
ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yrnA00
KKEKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"