CATH Domain: 1yqdA01 XML data for domain: 1yqdA01

Molscript image for 1yqdA01
1yqdA01
PDB coordinates for domain 1yqdA01

PDB 1yqd, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.180 Quinone Oxidoreductase; Chain A, domain 1
3.90.180.10 Medium-chain alcohol dehydrogenases, catalytic domain Gene3D
3.90.180.10.5
3.90.180.10.5.1
3.90.180.10.5.1.1
3.90.180.10.5.1.1.1
3.90.180.10.5.1.1.1.1

[top]
Segment boundaries for domain 1yqdA01

Chopping figure for domain 1yqdA01
DomainStart PDB ResidueStop PDB Residue
1yqdA01 4 166
1yqdA01 324 362
1yqdA02 167 323

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.90.180.10.5.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1piwA01 87.97 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.90.180.10 223 35 88 2.37 2.68
1lluA01 87.34 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.90.180.10 203 27 89 2.74 3.06
2xaaC01 84.37 Rhodococcus ruberSecondary alcohol dehydrogenase 3.90.180.10 208 22 84 2.20 2.61
1f8fA01 83.90 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.90.180.10 225 18 80 1.97 2.44
1vj0B01 83.08 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.90.180.10 217 19 84 2.95 3.48
1pl8A01 82.29 Zinc ion bindingMembrane fractionL-iditol 2-dehydrogenase [EC:1.1.1.14]Glucose metabolic processSorbitol catabolic process 3.90.180.10 217 18 87 4.24 4.87
1yb5A01 82.08 Xenobiotic catabolic processNADPH bindingNADPH2:quinone reductase [EC:1.6.5.5]Visual perceptionHomo sapiens 3.90.180.10 156 17 74 2.34 3.15
1wlyA01 81.68 2-haloacrylate reductaseBurkholderia sp. WS 3.90.180.10 175 16 71 2.07 2.88
1o89A01 81.30 Putative quinone oxidoreductase yhdHEscherichia coli K-12 3.90.180.10 153 15 75 3.51 4.66
1iz0A01 80.46 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.90.180.10 138 17 66 2.07 3.10
1n9gA01 80.16 Candida tropicalisEnoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 2, mitochondrial 3.90.180.10 207 13 71 2.85 3.96
[1]
Displaying entries 1 to 11 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1yqdA01
SPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGS
KVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAP
LLCDIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAATKP
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1yqdA01
GSHGMSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVG
EVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNM
PLDGGAPLLCDIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAATKP
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 06 Dec 2006 21:26

Assigning to "3.90.180.10" based on similarity with "1uufA01"

Flow stage update by auto on 06 Dec 2006 21:24

No in_process hits for Domain "1yqdA01" ready to be processed

Flow stage update by auto on 06 Dec 2006 21:24

NW result present for Domain "1yqdA01"

Flow stage update by auto on 06 Dec 2006 17:23

All required files are present for Domain "1yqdA01"

Flow stage update by auto on 05 Dec 2006 17:30

Beginning processing for Domain "1yqdA01"

Insertion by auto on 05 Dec 2006 17:21

Final ChopClose added based on similarity with "1yqdB"