CATH Domain: 1yqbA01 XML data for domain: 1yqbA01

Molscript image for 1yqbA01
1yqbA01
PDB coordinates for domain 1yqbA01

PDB 1yqb, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.90 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 Gene3D
3.10.20.90.17
3.10.20.90.17.1
3.10.20.90.17.1.1
3.10.20.90.17.1.1.1
3.10.20.90.17.1.1.1.1

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Segment boundaries for domain 1yqbA01

Chopping figure for domain 1yqbA01
DomainStart PDB ResidueStop PDB Residue
1yqbA01 21 91

Structural Neighbourhood (38 entries)

There are 38 matching structural neighberhood comparisons for CATH ID 3.10.20.90.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 38 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wh3A01 92.84 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 28 98 1.10 1.12
1m94A00 92.83 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 25 97 1.16 1.19
2kd0A01 92.72 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 32 100 1.06 1.06
1z2mA02 91.41 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 26 92 1.18 1.28
1z2mA01 90.01 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 30 93 1.56 1.67
1y8rC00 88.87 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 22 84 1.30 1.54
1wx9A00 88.43 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 28 81 1.25 1.54
1oqyA01 86.48 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 23 89 1.73 1.92
1p1aA00 86.39 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 26 83 1.50 1.80
1v5oA00 86.31 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 16 69 1.17 1.68
3ge3C00 86.08 Pseudomonas mendocinaToluene-4-monooxygenase system protein B 3.10.20.270 83 9 85 2.35 2.75
1wgdA00 85.32 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 23 76 1.71 2.24
1wxmA01 84.95 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 14 92 2.25 2.42
1t0yA00 84.70 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 19 78 1.90 2.41
1uh6A00 84.37 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 25 71 1.43 2.01
1v5tA00 84.32 Mus musculusUbiquitin-like domain-containing CTD phosphatase 1Protein phosphatase [EC:3.1.3.16] 3.10.20.90 90 11 78 1.76 2.23
1h8cA00 84.07 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 12 85 2.15 2.52
1se9A00 84.00 Membrane-anchored ubiquitin-fold protein 1Arabidopsis thaliana 3.10.20.90 101 19 70 1.82 2.59
1wmhA00 83.72 Tight junctionInsulin signaling pathwayEndocytosisVesicle-mediated transportProtein binding 3.10.20.240 83 11 83 2.33 2.80
2rd0A01 83.64 Jak-STAT signaling pathwayAldosterone-regulated sodium reabsorptionNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathway 3.10.20.90 100 9 70 2.00 2.86
1v86A00 83.13 Mus musculusPutative uncharacterized protein 3.10.20.90 95 19 73 1.51 2.05
2c60A01 82.99 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 9 80 2.37 2.94
2nptB01 82.84 Mitogen-activated protein kinase kinase kinase 2Gap junctionMitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25]GnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 16 83 2.37 2.82
1ip9A00 82.45 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 14 80 2.37 2.96
1v2yA00 81.44 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 22 67 2.05 3.03
2kfjA00 81.08 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipInvasive growth in response to glucose limitationCell division control protein 24 3.10.20.240 86 9 81 3.04 3.73
1wmhB00 81.05 Partitioning defective 6 homolog alphaTranscription factor bindingViral reproductionHomo sapiens 3.10.20.240 82 14 86 2.47 2.85
3kh0A00 80.82 Ral guanine nucleotide dissociation stimulatorSmall GTPase regulator activityHomo sapiens 3.10.20.90 102 8 69 2.51 3.61
1j8cA00 80.82 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 69 68 1.86 2.70
1y8qD03 79.07 SUMO-activating enzyme subunit 2Ubiquitin-like 1-activating enzyme E1 B [EC:6.3.2.19]Enzyme activator activityHomo sapiensUbiquitin mediated proteolysis 3.10.290.20 105 15 58 1.85 3.18
1k8rB00 79.04 Plasma membraneInduction of conjugation upon nitrogen starvationProtein bindingSchizosaccharomyces pombeProtein kinase byr2 3.10.20.90 82 7 69 2.74 3.94
2nptC01 78.60 Homo sapiensProtein bindingDual specificity mitogen-activated protein kinase kinase 5 3.10.20.240 88 8 77 2.83 3.66
1s3sH00 78.55 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 9 65 2.48 3.79
1oeyL00 78.49 Protein dimerization activityLeukocyte transendothelial migrationNeutrophil cytosolic factor 4CytosolNADPH oxidase complex 3.10.20.240 96 15 71 2.91 4.05
1wxsA00 77.19 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 8 80 3.30 4.09
2zjdA00 77.11 Microtubule-associated protein 1 light chainHomo sapiensMicrotubule-associated proteins 1A/1B light chain 3BProtein binding 3.10.20.90 121 15 58 2.47 4.21
1tz1A00 76.30 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipCell division control protein 24Invasive growth in response to glucose limitation 3.10.20.240 80 8 80 3.85 4.81
1i42A00 76.19 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 89 11 78 3.56 4.53
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Displaying entries 1 to 38 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yqbA01
LIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yqbA01
LIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 11 Jul 2007 22:03

Assigning to "3.10.20.90" based on similarity with "1wx7A01"

Flow stage update by auto on 11 Jul 2007 22:02

No in_process hits for Domain "1yqbA01" ready to be processed

Flow stage update by auto on 11 Jul 2007 22:02

NW result present for Domain "1yqbA01"

Flow stage update by auto on 10 Jul 2007 02:18

All required files are present for Domain "1yqbA01"

Flow stage update by auto on 09 Jul 2007 14:54

Beginning processing for Domain "1yqbA01"

Insertion by cuff on 09 Jul 2007 14:00

nice chopping