CATH Domain: 1ypqB00 XML data for domain: 1ypqB00

Molscript image for 1ypqB00
1ypqB00
PDB coordinates for domain 1ypqB00

PDB 1ypq, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.2
3.10.100.10.2.1
3.10.100.10.2.1.1
3.10.100.10.2.1.1.1
3.10.100.10.2.1.1.1.1

[top]
Segment boundaries for domain 1ypqB00

Chopping figure for domain 1ypqB00
DomainStart PDB ResidueStop PDB Residue
1ypqB00 136 270

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.10.100.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xphA00 89.48 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 139 30 94 3.35 3.53
3hupA00 88.73 CD69 antigenIntegral to plasma membraneEarly activation antigen CD69Homo sapiensTransmembrane receptor activity 3.10.100.10 114 27 84 1.69 2.00
3bdwA00 87.74 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 28 90 2.74 3.03
2h2tB01 87.59 Positive regulation of nitric-oxide synthase 2 biosynthetic processIntegral to plasma membraneHematopoietic cell lineagePositive regulation of nitric-oxide synthase activityPositive regulation of killing of cells of another organism 3.10.100.10 116 22 82 1.73 2.09
1hq8A00 87.39 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 35 90 2.67 2.95
1byfA00 86.43 LectinPolyandrocarpa misakiensis 3.10.100.10 123 18 85 2.28 2.68
1kza100 86.40 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 10 82 2.27 2.74
1jznA00 86.36 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 20 91 2.51 2.73
1tn3A00 86.25 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 135 14 89 2.53 2.82
1wmzA00 86.21 Cucumaria echinataLectin CEL-I, N-acetyl-D-galactosamine-specific C-type 3.10.100.10 140 19 89 2.55 2.86
1qddA00 85.83 Positive regulation of cell proliferationHomo sapiensGrowth factor activityLithostathine-1-alpha 3.10.100.10 144 17 87 2.66 3.04
1gz2A00 85.72 Peptidoglycan bindingShell calcificationLipopolysaccharide bindingGram-positive bacterial cell surface bindingOvocleidin-17 3.10.100.10 138 20 86 2.21 2.56
3g8kA00 85.45 Mus musculusPlasma membraneLectin-related NK cell receptor LY49L1 3.10.100.10 127 23 91 4.31 4.69
1sl6A00 85.35 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 30 76 2.45 3.19
1g1tA01 84.70 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 119 16 80 1.98 2.45
3c22D00 84.67 Mannose bindingC-type lectin domain family 4 member KCD207 antigenHomo sapiensEndocytic vesicle 3.10.100.10 122 18 83 2.72 3.25
1rtm100 84.62 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 10 84 2.71 3.20
1h8uB00 84.41 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 17 81 2.72 3.34
1pwbC00 84.30 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 3.10.100.10 150 11 86 3.73 4.34
1eslA00 81.84 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 15 71 2.42 3.36
1rjhA00 81.50 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 14 79 3.06 3.86
1f00I03 77.28 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 8 60 2.52 4.20
1cwvA05 76.15 InvasinYersinia pseudotuberculosis 3.10.100.10 100 11 61 2.73 4.44
[1]
Displaying entries 1 to 23 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1ypqB00
RVANCSAPCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPW
LWEDGSPLMPHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAFSICQKKANL
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1ypqB00
RVANCSAPCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPW
LWEDGSPLMPHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAFSICQKKANL
BLAST against CATH

[top]
Domain History Events (8)

Domain assigned by auto on 15 Aug 2007 00:20

Assigning to "3.10.100.10" based on similarity with "1ypqA00"

Flow stage update by auto on 14 Aug 2007 23:59

No in_process hits for Domain "1ypqB00" ready to be processed

Update comment by auto on 14 Aug 2007 22:47

Domain "1ypqB00" hits Domain "1ypqA00" (100% over 100%) which is currently in process

Flow stage update by auto on 20 Jul 2007 10:57

Domain "1ypqB00" hits Domain "1ypoH00" (97.7272727272727% over 96.2962962962963%) which is currently in process

Flow stage update by auto on 20 Jul 2007 10:57

NW result present for Domain "1ypqB00"

Flow stage update by auto on 16 Jul 2007 22:37

All required files are present for Domain "1ypqB00"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "1ypqB00"

Insertion by auto on 14 Jul 2007 04:25

Final ChopClose added based on similarity with "1ypuA"