CATH Domain: 1ynbA00 XML data for domain: 1ynbA00

Molscript image for 1ynbA00
1ynbA00
PDB coordinates for domain 1ynbA00

PDB 1ynb, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.3210 Hypothetical protein af1432
1.10.3210.10 Hypothetical protein af1432 Gene3D
1.10.3210.10.6
1.10.3210.10.6.1
1.10.3210.10.6.1.1
1.10.3210.10.6.1.1.1
1.10.3210.10.6.1.1.1.1

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Segment boundaries for domain 1ynbA00

Chopping figure for domain 1ynbA00
DomainStart PDB ResidueStop PDB Residue
1ynbA00 7 173

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.10.3210.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xx7A00 87.19 Pyrococcus furiosusOxetanocin-like proteinPutative hydrolases of HD superfamily 1.10.3210.10 172 28 91 2.75 3.01
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ynbA00
MDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHK
IARRYVSCDEEGAREEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEIYRVLMER
KNPVWWR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ynbA00
MCIIKPMDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEAR
TMDLHKIARRYVSCDEEGAREEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEIY
RVLMERKNPVWWR
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 30 Nov 2006 09:24

Assigning to "1.10.3210.10" based on similarity with "1ynbC00"

Flow stage update by auto on 30 Nov 2006 09:21

No in_process hits for Domain "1ynbA00" ready to be processed

Flow stage update by auto on 30 Nov 2006 09:21

NW result present for Domain "1ynbA00"

Flow stage update by auto on 29 Nov 2006 13:24

All required files are present for Domain "1ynbA00"

Flow stage update by auto on 28 Nov 2006 21:32

Beginning processing for Domain "1ynbA00"

Insertion by auto on 28 Nov 2006 21:22

Final ChopClose added based on similarity with "1ynbB"