CATH Domain: 1ympA00 XML data for domain: 1ympA00

Molscript image for 1ympA00
1ympA00
PDB coordinates for domain 1ympA00

PDB 1ymp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.20 Gene3D
1.25.40.20.10
1.25.40.20.10.1
1.25.40.20.10.1.1
1.25.40.20.10.1.1.1
1.25.40.20.10.1.1.1.1

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Segment boundaries for domain 1ympA00

Chopping figure for domain 1ympA00
DomainStart PDB ResidueStop PDB Residue
1ympA00 107 237

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 1.25.40.20.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bi7B00 88.50 Bladder cancerSenescencePathways in cancerNon-small cell lung cancerProtein binding 1.25.40.20 125 28 92 1.89 2.05
1ycsB01 88.47 Induction of apoptosisNF-kappaB bindingNegative regulation of cell cycleHomo sapiensApoptosis-stimulating of p53 protein 2 1.25.40.20 128 17 91 1.94 2.12
3ehrA02 85.13 Osteoclast-stimulating factor 1OssificationIdentical protein bindingHomo sapiensSignal transduction 1.25.40.20 114 15 64 1.11 1.73
1uohA00 82.85 26S proteasome non-ATPase regulatory subunit 10CytoplasmProteasome regulatory particleActin cytoskeletonHomo sapiens 1.25.40.20 223 29 58 1.55 2.64
2dznA00 80.72 26S proteasome non-ATPase regulatory subunit 10Proteasome regulatory particle assemblyProbable 26S proteasome regulatory subunit p28NucleusSaccharomyces cerevisiae 1.25.40.20 226 21 57 1.74 3.00
1k1aA00 80.56 Transcription factor bindingBcl3/NF-kappaB2 complexNegative regulation of apoptosisCytoplasmI-kappaB kinase/NF-kappaB cascade 1.25.40.20 228 25 57 1.95 3.39
1iknD00 79.96 Cytoplasmic sequestering of NF-kappaBNeurotrophin signaling pathwayT cell receptor signaling pathwayApoptosisAdipocytokine signaling pathway 1.25.40.20 215 21 60 1.90 3.17
1sw6A00 76.25 Regulatory protein SWI6MAPK signaling pathway - yeastPositive regulation of gene-specific transcriptionMeiosis - yeastTranscription coactivator activity 1.25.40.20 254 18 51 2.38 4.61
1n11A00 71.48 Structural constituent of cytoskeletonMaintenance of epithelial cell apical/basal polarityEnzyme bindingHomo sapiensAnkyrin-1 1.25.40.20 404 22 32 1.46 4.50
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ympA00
RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEET
PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ympA00
LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNK
EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 28 Nov 2006 18:32

Assigning to "1.25.40.20" based on similarity with "1n0rA00"

Flow stage update by auto on 28 Nov 2006 18:22

No in_process hits for Domain "1ympA00" ready to be processed

Flow stage update by auto on 28 Nov 2006 18:22

NW result present for Domain "1ympA00"

Flow stage update by auto on 28 Nov 2006 18:22

All required files are present for Domain "1ympA00"

Flow stage update by auto on 28 Nov 2006 18:21

Beginning processing for Domain "1ympA00"

Insertion by cuff on 20 Nov 2006 16:41

another nice batch of choppings from tony