CATH Domain: 1ym0A02 XML data for domain: 1ym0A02

Molscript image for 1ym0A02
1ym0A02
PDB coordinates for domain 1ym0A02

PDB 1ym0, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.58
2.40.10.10.58.1
2.40.10.10.58.1.1
2.40.10.10.58.1.1.1
2.40.10.10.58.1.1.1.1

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Segment boundaries for domain 1ym0A02

Chopping figure for domain 1ym0A02
DomainStart PDB ResidueStop PDB Residue
1ym0A01 16 27
1ym0A01 121 230
1ym0A02 28 120
1ym0A02 231 245

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.40.10.10.58.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1orfA02 91.47 Serine-type endopeptidase activityGranzyme A [EC:3.4.21.78]Protein homodimerization activityNucleusCleavage of lamin 2.40.10.10 105 27 93 1.77 1.89
3govB02 91.32 Serine-type endopeptidase activityCalcium ion bindingProtein homodimerization activityExtracellular spaceProtein binding 2.40.10.10 123 26 87 2.04 2.32
1fiwA02 91.00 Ovis ariesAcrosinDrug binding 2.40.10.10 120 27 91 2.17 2.37
2r0lA02 90.52 Serine-type endopeptidase activityHomo sapiensHepatocyte growth factor activatorProtein bindingProteolysis 2.40.10.10 113 28 94 1.75 1.85
1elvA01 89.80 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 98 22 81 1.63 2.01
2asuB02 89.57 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 103 21 88 1.43 1.62
1q3xA03 89.21 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 100 22 86 1.75 2.02
1rrkA02 85.93 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 117 16 76 2.81 3.65
2pkaA00 82.96 Sus scrofaGlandular kallikrein 2.40.10.10 80 25 60 1.46 2.40
1ky9A01 82.32 Two-component systemSerine-type endopeptidase activityProtease doResponse to temperature stimulusProtein binding 2.40.10.10 88 12 74 2.92 3.94
1sotA01 80.86 Escherichia coli O157:H7Protease degSSerine protease DegS [EC:3.4.21.-] 2.40.10.10 118 8 75 2.74 3.63
2qf3A01 80.00 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 102 8 67 2.88 4.24
2z9iC01 79.19 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 91 13 65 2.48 3.80
2hntC00 75.91 Serine-type endopeptidase activityFibrinolysisProthrombinSoluble fractionPositive regulation of protein phosphorylation 2.40.10.10 67 31 43 0.91 2.08
1eptA00 68.64 Sus scrofaTrypsin 2.40.10.10 43 46 27 1.23 4.44
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ym0A02
PWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDV
SVIKTAVAITFDINVGPVGFHAGWITDTITNN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ym0A02
PWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDV
SVIKTAVAITFDINVGPVGFHAGWITDTITNN
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 15 Dec 2006 15:40

Assigning to "2.40.10.10" based on similarity with "1co7E02"

Flow stage update by auto on 15 Dec 2006 15:36

No in_process hits for Domain "1ym0A02" ready to be processed

Flow stage update by auto on 15 Dec 2006 15:36

NW result present for Domain "1ym0A02"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1ym0A02"

Flow stage update by auto on 13 Dec 2006 15:37

Beginning processing for Domain "1ym0A02"

Insertion by cuff on 13 Dec 2006 14:54

batch of checked choppings