CATH Domain: 1ykdB01 XML data for domain: 1ykdB01

Molscript image for 1ykdB01
1ykdB01
PDB coordinates for domain 1ykdB01

PDB 1ykd, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.450 Beta-Lactamase
3.30.450.40 Gene3D
3.30.450.40.13
3.30.450.40.13.1
3.30.450.40.13.1.1
3.30.450.40.13.1.1.1
3.30.450.40.13.1.1.1.1

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Segment boundaries for domain 1ykdB01

Chopping figure for domain 1ykdB01
DomainStart PDB ResidueStop PDB Residue
1ykdB01 58 254
1ykdB02 255 441

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.450.40.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qybA00 79.41 Membrane protein, putativeGeobacter sulfurreducens 3.30.450.40 147 12 73 3.12 4.27
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ykdB01
VTEVEQKLQIVHQTLSMLDSHGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGSLEIRIPADKGIAG
EVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDNQGFT
SADEQLFQEFAPSIRLILESSRSFYIATQKQRA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ykdB01
VTEVEQKLQIVHQTLSMLDSHGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADK
GIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDN
QGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:49

Assigning to "3.30.450.40" based on similarity with "1ykdA01" (NWSI: 100, NWO: 98.4771573604061, SPS: 97.36, SPO: 97, RMSD: 0.59)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1ykdB01"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1ykdB01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1ykdB01"

Insertion by auto on 06 Mar 2006 00:28

Cut based on decision in database "DomChop" on "cathdb"