CATH Domain: 1yjrA00 XML data for domain: 1yjrA00

Molscript image for 1yjrA00
1yjrA00
PDB coordinates for domain 1yjrA00

PDB 1yjr, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.14
3.30.70.100.14.1
3.30.70.100.14.1.1
3.30.70.100.14.1.1.1
3.30.70.100.14.1.1.1.1

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Segment boundaries for domain 1yjrA00

Chopping figure for domain 1yjrA00
DomainStart PDB ResidueStop PDB Residue
1yjrA00 1 75

Structural Neighbourhood (82 entries)

There are 82 matching structural neighberhood comparisons for CATH ID 3.30.70.100.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 82 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mwyA00 89.56 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 20 96 2.61 2.72
2g9oA00 88.37 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 25 96 2.30 2.39
2kt2A00 87.53 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 23 92 2.18 2.37
2ofhX00 86.28 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 32 94 1.86 1.96
1y3jA00 86.01 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 77 37 96 2.37 2.47
2x3dF01 84.71 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 13 85 3.02 3.52
1in0A01 83.35 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 7 89 3.15 3.53
2nyiA01 82.70 3.30.70.260 77 16 90 3.72 4.09
2f1fA01 82.62 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 10 87 2.56 2.93
2fmrA00 82.24 CytoplasmSoluble fractionNucleolusHomo sapiensFragile X mental retardation 1 protein 3.30.1370.10 65 12 82 3.94 4.77
2rhsD06 81.89 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 6 75 2.31 3.08
1konA03 81.61 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 6 89 4.22 4.72
2qmwA03 81.55 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 8 86 3.17 3.66
1vi7A02 81.46 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 7 89 3.20 3.58
3ce8A00 81.34 Shewanella baltica OS155Putative uncharacterized protein 3.30.70.120 87 9 78 3.74 4.79
1vr6A01 81.30 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 13 92 3.59 3.90
2nzcA00 81.23 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 6 94 4.17 4.40
1harA02 81.12 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 10 84 2.72 3.24
1i1gA02 81.10 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 13 83 3.99 4.80
1gmuA01 80.82 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 8 78 3.93 5.00
1eayD00 80.73 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 89 3.60 4.03
1q5yD00 80.42 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 9 87 4.01 4.58
1utaA00 80.40 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 5 92 3.94 4.27
1mw7A03 80.18 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 14 93 4.20 4.50
1mlaA01 80.13 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 5 90 3.57 3.94
3c19A01 80.05 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 13 73 3.29 4.48
1lwcB02 79.92 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 87 14 81 3.03 3.71
2w25A02 79.90 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 6 85 3.89 4.57
1o8bA02 79.82 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 11 82 3.30 3.99
1y7pB01 79.60 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 6 88 3.42 3.85
1zpvB00 79.44 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 12 85 3.43 4.03
1s99A01 79.33 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 6 88 4.11 4.65
1dloB02 79.16 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 93 14 78 3.81 4.85
2qmxA03 79.00 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 5 81 3.73 4.60
2j8sA07 78.65 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1440 94 5 78 3.85 4.89
1fjeB01 78.61 NucleolinMesocricetus auratus 3.30.70.330 81 5 88 3.97 4.47
2pd1A01 78.59 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 12 79 3.54 4.45
1s1tA02 78.46 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 13 78 3.38 4.31
1xmbA02 78.39 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 16 74 3.38 4.55
1sc6A03 78.39 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 5 88 4.02 4.54
1q8bA00 78.34 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 6 80 3.83 4.73
2i0xA01 78.27 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 10 82 3.72 4.50
1nh8A03 78.27 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 13 82 3.29 3.98
2od4B01 78.25 3.30.70.900 81 9 88 4.23 4.76
1u0sA00 78.24 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 5 80 3.36 4.19
2hfvA01 78.22 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 8 84 3.88 4.60
1no8A00 77.73 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 6 89 4.10 4.57
2pehA01 77.70 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 5 81 3.45 4.21
1lfpA03 77.51 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 12 88 4.23 4.81
1cvjA01 77.50 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 8 87 3.17 3.64
2dy1A03 77.37 Thermus thermophilus HB8Elongation factor EF-G [EC:3.6.5.3]Elongation factor G (EF-G-2) 3.30.70.870 76 13 94 4.63 4.89
1fxlA02 77.32 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 10 83 3.29 3.96
1x5uA01 77.31 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 4 83 3.46 4.13
1l3kA01 77.27 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 10 84 3.95 4.67
2ia0B02 77.24 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 16 72 3.62 4.98
2fgcA03 77.24 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 10 86 4.05 4.67
2do0A01 77.03 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 5 88 3.30 3.74
1f0xA01 76.97 Pyruvate metabolismD-lactate dehydrogenaseNAD or NADH bindingEscherichia coli K-12D-lactate dehydrogenase [EC:1.1.1.28] 3.30.70.610 100 5 69 3.29 4.77
1lfwA03 76.94 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 9 73 3.00 4.06
2rb7A02 76.90 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 10 69 3.22 4.64
1xtzA02 76.64 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 6 79 3.67 4.60
2j8sA06 76.53 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 6 69 3.23 4.65
2wriY03 76.40 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 8 98 4.20 4.26
2hzcA00 76.40 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 6 81 3.89 4.77
1l3kA02 76.37 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 10 87 4.18 4.79
1fxlA01 76.33 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 12 74 3.12 4.18
2qfjA02 75.97 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 8 80 3.74 4.65
2nyiA02 75.83 3.30.70.260 89 16 83 3.89 4.68
1sxlA00 75.74 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 8 72 3.43 4.75
2errA01 75.67 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 8 87 3.76 4.28
1b7yB06 75.56 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 8 76 3.20 4.17
1cvjG02 75.49 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 13 82 4.12 4.97
1uw4A00 75.29 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 6 77 3.75 4.82
1nm2A01 75.28 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 5 86 3.81 4.40
2zd1A02 75.16 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 17 76 3.35 4.37
1j27A00 75.11 Hypothetical proteinThermus thermophilusPutative uncharacterized protein 3.30.70.1120 98 10 76 3.67 4.80
1x5oA01 74.87 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 4 82 3.92 4.75
1d8zA00 74.83 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 10 80 4.02 4.97
1lfwA02 74.77 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 14 67 3.20 4.71
3dnjB00 74.21 ATP-dependent Clp protease adaptor protein ClpSCaulobacter vibrioidesATP-dependent Clp protease adapter protein clpS 3.30.1390.10 75 2 84 4.14 4.93
2vooA02 74.14 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 8 83 3.88 4.67
1qd1A02 73.31 Formimidoyltransferase-cyclodeaminaseOne carbon pool by folateSus scrofaFormiminotetrahydrofolate cyclodeaminase [EC:4.3.1.4]Glutamate formiminotransferase [EC:2.1.2.5] 3.30.70.670 139 8 50 2.26 4.49
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Displaying entries 1 to 82 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yjrA00
MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKIE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yjrA00
MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKIE
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 15 Aug 2007 00:20

Assigning to "3.30.70.100" based on similarity with "1s6oA00"

Flow stage update by auto on 14 Aug 2007 23:59

No in_process hits for Domain "1yjrA00" ready to be processed

Update comment by auto on 14 Aug 2007 22:47

Domain "1yjrA00" hits Domain "1y3jA00" (37.3333333333333% over 96.1038961038961%) which is currently in process

Flow stage update by auto on 20 Jul 2007 10:57

Domain "1yjrA00" hits Domain "1y3kA00" (37.3333333333333% over 96.1038961038961%) which is currently in process

Flow stage update by auto on 20 Jul 2007 10:57

NW result present for Domain "1yjrA00"

Flow stage update by auto on 16 Jul 2007 22:37

All required files are present for Domain "1yjrA00"

Flow stage update by auto on 14 Jul 2007 21:06

Beginning processing for Domain "1yjrA00"

Insertion by auto on 14 Jul 2007 20:10

Final ChopClose added based on similarity with "1yjuA"