CATH Domain: 1yizA02 XML data for domain: 1yizA02

Molscript image for 1yizA02
1yizA02
PDB coordinates for domain 1yizA02

PDB 1yiz, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.5
3.40.640.10.5.1
3.40.640.10.5.1.1
3.40.640.10.5.1.1.1
3.40.640.10.5.1.1.1.1

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Segment boundaries for domain 1yizA02

Chopping figure for domain 1yizA02
DomainStart PDB ResidueStop PDB Residue
1yizA01 12 52
1yizA01 310 429
1yizA02 53 309

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.40.640.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xi9A02 88.32 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 25 91 1.78 1.95
1gd9A02 88.21 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 31 86 1.56 1.80
1o4sA02 87.58 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 29 85 1.55 1.80
3dydA02 86.53 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 21 91 1.89 2.06
1c7nA02 85.30 Treponema denticolaHemolysin 3.40.640.10 225 19 85 1.98 2.33
1d2fA02 84.97 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 17 91 2.29 2.51
1m7yA02 84.27 Malus x domestica1-aminocyclopropane-1-carboxylate synthase1-aminocyclopropane-1-carboxylate synthase activity 3.40.640.10 257 18 89 2.56 2.85
1lc5A02 83.27 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumThreonine-phosphate decarboxylaseThreonine-phosphate decarboxylase [EC:4.1.1.81] 3.40.640.10 225 16 87 2.55 2.93
1fg7A01 82.24 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 18 78 2.29 2.92
3ffhB02 82.20 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 19 80 2.47 3.05
1uu1A02 81.71 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 19 78 2.52 3.21
3ftbA02 81.68 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 16 84 2.45 2.89
2hoxA02 80.64 Alliin lyase 1Allium sativum 3.40.640.10 210 13 74 2.76 3.72
1eluA02 80.49 Synechocystis sp. PCC 6714L-cysteine/cystine lyase C-DES 3.40.640.10 264 14 83 3.11 3.73
1p3wA02 80.28 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 11 86 3.47 4.02
1t3iB02 80.17 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 14 84 3.89 4.60
1bs0A02 80.02 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 10 82 3.23 3.92
1ajsB02 79.95 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 13 88 3.57 4.05
1fc4A01 79.93 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 15 82 3.61 4.36
2ez2A02 79.91 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 12 89 3.64 4.09
1jg8A01 79.88 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 11 86 3.45 4.00
3d6kA02 79.64 Corynebacterium diphtheriaePutative uncharacterized protein 3.40.640.10 237 12 84 3.93 4.64
1mdoA01 79.32 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 14 78 3.69 4.68
3dr4C01 78.69 Perosamine synthetasePerosamine synthetaseCaulobacter vibrioides 3.40.640.10 236 11 82 3.82 4.61
1o69A01 78.69 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 12 82 3.75 4.57
1svvA01 78.28 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 13 83 2.90 3.49
2q7wA02 77.99 Tyrosine metabolismArginine and proline metabolismMetabolic pathwaysPhenylalanine metabolismCysteine and methionine metabolism 3.40.640.10 243 10 88 3.97 4.48
2yrrA02 77.93 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 12 84 3.65 4.33
1s0aA02 77.79 Biotin metabolismMetabolic pathwaysAdenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K-12 3.40.640.10 268 8 85 4.15 4.86
3b8xA01 77.61 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.40.640.10 258 8 81 3.60 4.40
1zodA02 77.61 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 9 85 3.77 4.42
2oatA02 77.60 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 11 84 3.89 4.59
1sffA02 77.57 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 8 86 4.00 4.60
1m32A02 77.43 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 10 81 3.42 4.19
3kgwA02 76.13 Mus musculusSerine--pyruvate aminotransferase, mitochondrialPeroxisomeOxalic acid secretionGlyoxylate metabolic process 3.40.640.10 227 10 77 3.58 4.61
2qmaA03 75.72 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 10 80 3.34 4.17
3k40A02 75.68 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 7 83 3.99 4.78
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yizA02
KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIE
PFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCK
KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQ
EAIAVGFETELKRLKS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yizA02
KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIE
PFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCK
KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGXTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPI
QEAIAVGFETELKRLKS
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 09 Dec 2006 05:20

Assigning to "3.40.640.10" based on similarity with "1yiyA02"

Flow stage update by auto on 09 Dec 2006 05:20

No in_process hits for Domain "1yizA02" ready to be processed

Update comment by auto on 09 Dec 2006 01:26

Domain "1yizA02" hits Domain "1yiyB02" (99.6108949416342% over 100%) which is currently in process

Update comment by auto on 08 Dec 2006 21:18

Domain "1yizA02" hits Domain "1yiyA02" (99.6108949416342% over 100%) which is currently in process

Flow stage update by auto on 08 Dec 2006 21:17

Domain "1yizA02" hits Domain "1yiyA02" (99.6108949416342% over 100%) which is currently in process

Flow stage update by auto on 08 Dec 2006 21:17

NW result present for Domain "1yizA02"

Flow stage update by auto on 07 Dec 2006 17:18

All required files are present for Domain "1yizA02"

Flow stage update by auto on 06 Dec 2006 17:22

Beginning processing for Domain "1yizA02"

Insertion by cuff on 06 Dec 2006 15:45

another small batch of choppings