CATH Domain: 1yf3A02

1yf3A02

PDB 1yf3, Chain A, Domain 2

CATH Code	Level Description	Links
1	Mainly Alpha
1.10	Orthogonal Bundle
1.10.1020	Adenine-specific Methyltransferase; domain 2
1.10.1020.10	Adenine-specific Methyltransferase, Domain 2	Gene3D
1.10.1020.10.2
1.10.1020.10.2.1
1.10.1020.10.2.1.1
1.10.1020.10.2.1.1.1
1.10.1020.10.2.1.1.1.1

Structure
Sequence
History

[top]
Segment boundaries for domain 1yf3A02

Domain	Start PDB Residue	Stop PDB Residue
1yf3A01	1	51
1yf3A01	147	259
1yf3A02	52	146

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

[top]
Domain ATOM Sequence

>pdb|1yf3A02
QEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINYKGNFTTPFGKRT
INKNSEKRFNHFKQN

BLAST against CATH

[top]
Domain COMBS Sequence

>pdb|1yf3A02
QEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINYKGNFTTPFGKRT
INKNSEKRFNHFKQN

BLAST against CATH

[top]
Domain History Events (12)

Domain assigned by auto on 01 Nov 2006 22:04

Assigning to "1.10.1020.10" based on similarity with "1q0sA02"

Flow stage update by auto on 01 Nov 2006 21:56

No in_process hits for Domain "1yf3A02" ready to be processed