CATH Domain: 1ydyA00 XML data for domain: 1ydyA00

Molscript image for 1ydyA00
1ydyA00
PDB coordinates for domain 1ydyA00

PDB 1ydy, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase Gene3D
3.20.20.190.5
3.20.20.190.5.1
3.20.20.190.5.1.1
3.20.20.190.5.1.1.1
3.20.20.190.5.1.1.1.1

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Segment boundaries for domain 1ydyA00

Chopping figure for domain 1ydyA00
DomainStart PDB ResidueStop PDB Residue
1ydyA00 29 356

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.20.20.190.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2oogD00 83.98 Glycerophospholipid metabolismGlycerophosphoryl diester phosphodiesteraseStaphylococcus aureus subsp. aureus str. NewmanGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] 3.20.20.190 262 32 74 2.41 3.23
2o55A00 80.95 3.20.20.190 247 19 71 2.53 3.52
1o1zA00 80.80 Thermotoga maritimaGlycerophospholipid metabolismGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Putative uncharacterized protein 3.20.20.190 226 25 67 2.24 3.31
2otdA01 79.10 Glycerophospholipid metabolismShigella flexneriGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Glycerophosphodiester phosphodiesterase 3.20.20.190 222 20 67 2.45 3.65
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ydyA00
NEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFT
LDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAK
TLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMK
QVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFP
DKAVKFLN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ydyA00
NEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFT
LDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAK
TLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMK
QVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFP
DKAVKFLN
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:42

Assigning to "3.20.20.190" based on similarity with "1t8qA00" (NWSI: 97.2560975609756, NWO: 97.6190476190476, SPS: 97.29, SPO: 97, RMSD: 0.50)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1ydyA00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1ydyA00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1ydyA00"

Insertion by auto on 09 Mar 2006 23:46

Final ChopClose added based on similarity with "1t8qA" [LEE: 0, LME: 0, MR: 0, LG: 2, SS: 97.29, SI: 96.1309523809524, SO: 93.8202247191011]