CATH Domain: 1ydgA00 XML data for domain: 1ydgA00

Molscript image for 1ydgA00
1ydgA00
PDB coordinates for domain 1ydgA00

PDB 1ydg, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.11
3.40.50.360.11.1
3.40.50.360.11.1.1
3.40.50.360.11.1.1.1
3.40.50.360.11.1.1.1.1

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Segment boundaries for domain 1ydgA00

Chopping figure for domain 1ydgA00
DomainStart PDB ResidueStop PDB Residue
1ydgA00 3 203

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.360.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2arkA00 86.46 FlavodoxinAquifex aeolicus 3.40.50.360 180 28 81 1.96 2.42
3d7nA00 86.05 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 24 76 2.47 3.24
1e5dA01 84.57 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 18 70 1.90 2.71
2ohhA02 83.79 Type A flavoprotein fprAMethanothermobacter marburgensis str. Marburg 3.40.50.360 144 15 70 2.18 3.09
3gfsC00 82.44 Bacillus subtilisFMN-dependent NADPH-azoreductase 3.40.50.360 169 14 72 2.72 3.74
5nulA00 80.40 Clostridium beijerinckiiFlavodoxin 3.40.50.360 138 14 67 2.30 3.42
2hpvA00 79.60 FMN-dependent NADH-azoreductaseFMN-dependent NADH-azoreductase [EC:1.7.-.-]Enterococcus faecalis 3.40.50.360 204 9 73 3.66 4.98
1bvyF00 77.57 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 13 75 3.71 4.94
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ydgA00
APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVF
SSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGG
NPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ydgA00
MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE
AIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIF
KSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGSHHHHHH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:42

Assigning to "3.40.50.360" based on similarity with "1ydgC00" (NWSI: 100, NWO: 100, SPS: 98.31, SPO: 99, RMSD: 0.28)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1ydgA00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1ydgA00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1ydgA00"

Insertion by auto on 09 Mar 2006 23:41

Final ChopClose added based on similarity with "1ydgB" [LEE: 0, LME: 0, MR: 1, LG: 1, SS: 97.96, SI: 100, SO: 100]