CATH Domain: 1ycsB01 XML data for domain: 1ycsB01

Molscript image for 1ycsB01
1ycsB01
PDB coordinates for domain 1ycsB01

PDB 1ycs, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.20 Gene3D
1.25.40.20.12
1.25.40.20.12.1
1.25.40.20.12.1.1
1.25.40.20.12.1.1.1
1.25.40.20.12.1.1.1.1

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Segment boundaries for domain 1ycsB01

Chopping figure for domain 1ycsB01
DomainStart PDB ResidueStop PDB Residue
1ycsB01 327 454
1ycsB02 455 518

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.25.40.20.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ehrA02 89.12 Osteoclast-stimulating factor 1OssificationIdentical protein bindingHomo sapiensSignal transduction 1.25.40.20 114 22 88 1.49 1.69
1bi7B00 87.01 Bladder cancerSenescencePathways in cancerNon-small cell lung cancerProtein binding 1.25.40.20 125 19 95 2.23 2.34
1uohA00 79.94 26S proteasome non-ATPase regulatory subunit 10CytoplasmProteasome regulatory particleActin cytoskeletonHomo sapiens 1.25.40.20 223 20 56 2.21 3.94
2dznA00 78.34 26S proteasome non-ATPase regulatory subunit 10Proteasome regulatory particle assemblyProbable 26S proteasome regulatory subunit p28NucleusSaccharomyces cerevisiae 1.25.40.20 226 27 54 2.29 4.17
1iknD00 78.30 Cytoplasmic sequestering of NF-kappaBNeurotrophin signaling pathwayT cell receptor signaling pathwayApoptosisAdipocytokine signaling pathway 1.25.40.20 215 21 58 2.47 4.21
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ycsB01
PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV
QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ycsB01
PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV
QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK
BLAST against CATH

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Domain History Events (2)

Insertion by lewis on 18 Jan 2007 20:42

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 20:42

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.