CATH Domain: 1yceA01 XML data for domain: 1yceA01

Molscript image for 1yceA01
1yceA01
PDB coordinates for domain 1yceA01

PDB 1yce, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.20 F1FO ATP Synthase
1.20.20.10 F1FO ATP Synthase Gene3D
1.20.20.10.1
1.20.20.10.1.2
1.20.20.10.1.2.1
1.20.20.10.1.2.1.1
1.20.20.10.1.2.1.1.45

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Segment boundaries for domain 1yceA01

Chopping figure for domain 1yceA01
DomainStart PDB ResidueStop PDB Residue
1yceA01 1 82

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.20.20.10.1.2.1.1.45 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2x2vA00 89.81 Bacillus pseudofirmus OF4ATP synthase subunit cOxidative phosphorylationF-type H+-transporting ATPase subunit c [EC:3.6.3.14]Metabolic pathways 1.20.20.10 68 26 87 1.38 1.58
1a91A00 87.76 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportATP synthase subunit cF-type H+-transporting ATPase subunit c [EC:3.6.3.14] 1.20.20.10 79 25 96 2.07 2.15
1cxzB00 82.15 CytoplasmSerine/threonine-protein kinase N1Plasma membraneHomo sapiensActivation of JUN kinase activity 1.10.287.160 86 6 84 3.38 3.98
1nt2B02 81.54 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 5 84 3.76 4.44
3cp1A00 79.23 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 73 4 80 3.99 4.94
2qtsA01 79.05 Amiloride-sensitive cation channel 2, neuronalAmiloride-sensitive cation channel 2, neuronalGallus gallus 1.10.287.770 67 4 66 2.95 4.42
1v54C01 78.59 Cytochrome c oxidase subunit 3Bos taurus 1.10.287.70 68 10 82 3.99 4.86
1dd5A01 78.35 Thermotoga maritimaRibosome recycling factorRibosome-recycling factor 1.10.132.20 109 10 71 3.46 4.84
1joyA00 75.85 Two-component systemOsmolarity sensor protein envZTwo-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]Protein bindingEscherichia coli K-12 1.10.287.130 67 5 85 3.65 4.25
2bl2A00 74.50 Enterococcus hiraeV-type sodium ATPase subunit K 1.20.120.610 156 19 47 1.99 4.20
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yceA01
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLY
AN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yceA01
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLY
AN
BLAST against CATH

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Domain History Events (37)

Domain assigned by auto on 04 Dec 2008 18:39

Assigning to "1.20.20.10" based on similarity with "1yceD01"

Flow stage update by auto on 04 Dec 2008 18:37

No in_process hits for Domain "1yceA01" ready to be processed

Update comment by auto on 04 Dec 2008 18:35

Domain "1yceA01" hits Domain "1yceF01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:33

Domain "1yceA01" hits Domain "1ycep01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:31

Domain "1yceA01" hits Domain "1ycei01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:29

Domain "1yceA01" hits Domain "1ycet01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:27

Domain "1yceA01" hits Domain "1yceD01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:25

Domain "1yceA01" hits Domain "1ycel01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:23

Domain "1yceA01" hits Domain "1yceN01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:20

Domain "1yceA01" hits Domain "1yceJ01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:18

Domain "1yceA01" hits Domain "1yceB01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:16

Domain "1yceA01" hits Domain "1yceb01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:14

Domain "1yceA01" hits Domain "1yceC01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:12

Domain "1yceA01" hits Domain "1yceH01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:10

Domain "1yceA01" hits Domain "1yceL01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:09

Domain "1yceA01" hits Domain "1yceI01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:07

Domain "1yceA01" hits Domain "1yceM01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:05

Domain "1yceA01" hits Domain "1ycec01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:03

Domain "1yceA01" hits Domain "1yced01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 18:01

Domain "1yceA01" hits Domain "1yceO01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:59

Domain "1yceA01" hits Domain "1yceQ01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:57

Domain "1yceA01" hits Domain "1yceT01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:55

Domain "1yceA01" hits Domain "1yceR01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:53

Domain "1yceA01" hits Domain "1yceP01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:51

Domain "1yceA01" hits Domain "1ycea01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:49

Domain "1yceA01" hits Domain "1yceK01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:47

Domain "1yceA01" hits Domain "1yceu01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:45

Domain "1yceA01" hits Domain "1yces01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:43

Domain "1yceA01" hits Domain "1ycee01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:37

Domain "1yceA01" hits Domain "1yceg01" (100% over 100%) which is currently in process

Update comment by auto on 04 Dec 2008 17:23

Domain "1yceA01" hits Domain "1ycem01" (100% over 100%) which is currently in process

Update comment by auto on 12 Sep 2008 23:09

Domain "1yceA01" hits Domain "1yceS01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Sep 2008 23:08

Domain "1yceA01" hits Domain "1yceS01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Sep 2008 23:08

NW result present for Domain "1yceA01"

Flow stage update by auto on 11 Sep 2008 11:06

All required files are present for Domain "1yceA01"

Flow stage update by auto on 10 Sep 2008 17:44

Beginning processing for Domain "1yceA01"

Insertion by auto on 10 Sep 2008 15:24

Final ChopClose added based on similarity with "1yceE"