CATH Domain: 1yc6100 XML data for domain: 1yc6100

Molscript image for 1yc6100
1yc6100
PDB coordinates for domain 1yc6100

PDB 1yc6, Chain 1, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.220 Gene3D
2.60.120.220.3
2.60.120.220.3.1
2.60.120.220.3.1.2
2.60.120.220.3.1.2.1
2.60.120.220.3.1.2.1.1

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Segment boundaries for domain 1yc6100

Chopping figure for domain 1yc6100
DomainStart PDB ResidueStop PDB Residue
1yc6100 36 189

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 2.60.120.220.3.1.2.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1f15B00 80.30 Coat proteinCucumber mosaic virus (strain FNY) 2.60.120.530 190 16 76 2.59 3.37
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yc6100
AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQA
EAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yc6100
AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQA
EAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:41

Assigning to "2.60.120.220" based on similarity with "1yc6300" (NWSI: 100, NWO: 100, SPS: 98.64, SPO: 100, RMSD: 0.71)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1yc6100"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1yc6100"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1yc6100"

Insertion by auto on 09 Mar 2006 23:36

Final ChopClose added based on similarity with "1yc6A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 98.59, SI: 100, SO: 100]