CATH Domain: 1ybaA02 XML data for domain: 1ybaA02

Molscript image for 1ybaA02
1ybaA02
PDB coordinates for domain 1ybaA02

PDB 1yba, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.86
3.40.50.720.86.2
3.40.50.720.86.2.1
3.40.50.720.86.2.1.1
3.40.50.720.86.2.1.1.1

Segment boundaries for domain 1ybaA02

Chopping figure for domain 1ybaA02
DomainStart PDB ResidueStop PDB Residue
1ybaA01 5 108
1ybaA01 298 326
1ybaA02 109 297
1ybaA03 328 409

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.40.50.720.86.2.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gdhA02 89.18 Glycerate dehydrogenaseHyphomicrobium methylovorum 3.40.50.720 184 29 91 2.09 2.29
1qp8A02 87.16 Pyrobaculum aerophilum2-hydroxyacid dehydrogenase 3.40.50.720 179 21 94 2.30 2.44
3d4oA02 81.08 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 17 67 2.25 3.35
1gpjA02 79.46 Methanopyrus kandleriPorphyrin and chlorophyll metabolismGlutamyl-tRNA reductase [EC:1.2.1.70]Glutamyl-tRNA reductaseMetabolic pathways 3.40.50.720 154 14 72 3.29 4.56
1a4iB01 78.77 Methenyltetrahydrofolate cyclohydrolase activityHomo sapiensC-1-tetrahydrofolate synthase, cytoplasmicMitochondrionProtein binding 3.40.50.720 137 14 62 2.36 3.79
3grfA02 78.67 Arginine and proline metabolismGiardia intestinalisOrnithine carbamoyltransferaseOrnithine carbamoyltransferase [EC:2.1.3.3]Metabolic pathways 3.40.50.1370 165 8 70 3.40 4.86
3d6nB02 78.60 Pyrimidine metabolismAspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]Aspartate carbamoyltransferaseAlanine, aspartate and glutamate metabolismMetabolic pathways 3.40.50.1370 144 12 62 2.82 4.49
1ml4A02 78.41 Pyrimidine metabolismAspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]Pyrococcus abyssiAspartate carbamoyltransferaseAlanine, aspartate and glutamate metabolism 3.40.50.1370 158 8 68 2.85 4.14
1vi2A02 77.53 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 10 64 3.09 4.79
1lluA02 77.28 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 10 66 2.94 4.41
1vj0A02 76.72 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.40.50.720 147 13 67 3.07 4.53
1bgvA01 76.65 NAD-specific glutamate dehydrogenaseClostridium symbiosum 3.40.50.720 167 8 71 3.27 4.56
1h2bA02 76.61 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 12 67 3.00 4.43
1pl8A02 76.39 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 12 66 3.24 4.90
1f8fA02 75.55 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 8 64 2.98 4.62
1piwA02 75.24 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 15 65 3.09 4.71
1iz0A02 74.84 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.40.50.720 152 12 63 2.74 4.29
2dc1A01 73.98 Aspartate dehydrogenase [EC:1.4.1.21]Archaeoglobus fulgidusProbable L-aspartate dehydrogenaseNicotinate and nicotinamide metabolism 3.40.50.720 135 17 56 2.82 4.98
Displaying entries 1 to 18 (page 1 of 1)


Domain ATOM Sequence

>pdb|1ybaA02
TRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGYVYFYDIENKLPLG
NATQVQHLSDLLNSDVVSLHVPENPSTKNGAKEISLKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATN
SDPFTSPLCEFDNVLLTPHIGGST    

Domain COMBS Sequence

>pdb|1ybaA02
TRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL
GNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPT
EPATNSDPFTSPLCEFDNVLLTPHIGGST    

Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:41

Assigning to "3.40.50.720" based on similarity with "1psdB02" (NWSI: 97.3544973544974, NWO: 100, SPS: 96.26, SPO: 97, RMSD: 0.37)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1ybaA02"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1ybaA02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1ybaA02"

Insertion by auto on 09 Mar 2006 23:29

Final ChopClose added based on similarity with "1ybaB" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 96.02, SI: 98.0487804878049, SO: 100]