CATH Domain: 1yarH00 XML data for domain: 1yarH00

Molscript image for 1yarH00
1yarH00
PDB coordinates for domain 1yarH00

PDB 1yar, Chain H, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.15
3.60.20.10.15.1
3.60.20.10.15.1.1
3.60.20.10.15.1.1.1
3.60.20.10.15.1.1.1.1

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Segment boundaries for domain 1yarH00

Chopping figure for domain 1yarH00
DomainStart PDB ResidueStop PDB Residue
1yarH00 1 203

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.60.20.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rypK00 88.63 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 25 94 1.74 1.84
1q5qH00 88.56 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 30 90 1.88 2.08
2fhh200 88.08 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 29 90 2.10 2.31
1g3kA00 85.86 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 16 82 2.40 2.90
3h6iQ00 85.54 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 13 84 2.71 3.21
1rypB00 85.30 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 17 78 3.36 4.26
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1yarH00
TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA
TLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAIS
AAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1yarH00
MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV
NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV
DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLILHHHHHH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:39

Assigning to "3.60.20.10" based on similarity with "1ya7L00" (NWSI: 100, NWO: 100, SPS: 98.73, SPO: 100, RMSD: 0.16)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1yarH00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1yarH00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1yarH00"

Insertion by auto on 09 Mar 2006 23:22

Final ChopClose added based on similarity with "1ya7H" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 99.02, SI: 100, SO: 100]