CATH Domain: 1y9zA02

1y9zA02

PDB 1y9z, Chain A, Domain 2

CATH Code	Level Description	Links
3	Alpha Beta
3.50	3-Layer(bba) Sandwich
3.50.30	Glucose Oxidase; domain 1
3.50.30.30		Gene3D
3.50.30.30.1
3.50.30.30.1.1
3.50.30.30.1.1.1
3.50.30.30.1.1.1.1
3.50.30.30.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1y9zA02

Domain	Start PDB Residue	Stop PDB Residue
1y9zA01	1	214
1y9zA01	360	435
1y9zA02	215	359

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.50.30.30.1.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	3kasA02	80.17	Integral to plasma membraneHematopoietic cell lineageExtracellular regionCoated pitEndocytosis	3.50.30.30	178	10	69	2.92	4.19

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Domain ATOM Sequence

>pdb|1y9zA02
RLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINS
TKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGN

BLAST against CATH

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Domain COMBS Sequence

>pdb|1y9zA02
RLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINS
TKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGN

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:14

Assigning to "3.50.30.30" based on similarity with "1v6cA02"