CATH Domain: 1y8tB02 XML data for domain: 1y8tB02

Molscript image for 1y8tB02
1y8tB02
PDB coordinates for domain 1y8tB02

PDB 1y8t, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.55
2.40.10.10.55.1
2.40.10.10.55.1.1
2.40.10.10.55.1.1.1
2.40.10.10.55.1.1.1.1

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Segment boundaries for domain 1y8tB02

Chopping figure for domain 1y8tB02
DomainStart PDB ResidueStop PDB Residue
1y8tB01 6 102
1y8tB02 103 226
1y8tB03 227 314

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.40.10.10.55.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qf3B02 90.27 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 103 43 88 2.01 2.28
1lcyA02 85.20 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Endoplasmic reticulum membraneParkinson's diseaseNucleus 2.40.10.10 84 51 74 2.76 3.69
2j92A02 83.11 Foot-and-mouth disease virus (strain A10-61)Genome polyprotein 2.40.10.10 109 18 90 2.90 3.22
1si5H01 80.82 Pathways in cancerHepatocyte growth factorEpithelial to mesenchymal transitionRenal cell carcinomaCytokine-cytokine receptor interaction 2.40.10.10 119 14 75 3.19 4.22
2o8mA02 80.31 Genome polyproteinHepatitis C virus subtype 1a 2.40.10.10 87 13 72 2.78 3.86
1elvA02 80.25 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 126 16 72 3.32 4.60
2asuB01 80.05 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 122 12 70 2.59 3.67
2hrvA02 79.60 Genome polyproteinHuman rhinovirus 2 2.40.10.10 95 10 76 3.08 4.02
2hlcA02 79.39 CollagenaseHypoderma lineatum 2.40.10.10 126 16 75 3.35 4.44
1q3xA02 78.16 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 15 67 3.10 4.57
2pkaB00 77.57 Sus scrofaGlandular kallikrein 2.40.10.10 152 14 65 2.92 4.48
1befA02 77.32 2.40.10.10 85 8 63 3.03 4.74
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1y8tB02
ISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTNTVLDAIQTDAAINPGNSGGALVNNAQLVGVNSAIATL
GAQSGSIGLGFAIPVDQAKRIADELISTGKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1y8tB02
ISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVG
VNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:33

Assigning to "2.40.10.10" based on similarity with "1y8tA02" (NWSI: 99.1935483870968, NWO: 99.2, SPS: 97.24, SPO: 98, RMSD: 0.27)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1y8tB02"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1y8tB02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1y8tB02"

Insertion by auto on 06 Mar 2006 00:26

Cut based on decision in database "DomChop" on "cathdb"