CATH Domain: 1y88A02 XML data for domain: 1y88A02

Molscript image for 1y88A02
1y88A02
PDB coordinates for domain 1y88A02

PDB 1y88, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.12
1.10.150.20.12.1
1.10.150.20.12.1.1
1.10.150.20.12.1.1.1
1.10.150.20.12.1.1.1.1

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Segment boundaries for domain 1y88A02

Chopping figure for domain 1y88A02
DomainStart PDB ResidueStop PDB Residue
1y88A01 3 127
1y88A02 128 186

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 1.10.150.20.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2dflA01 88.38 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 23 96 1.74 1.80
1szpA01 88.14 DNA repair protein RAD51Identical protein bindingDouble-strand break repair via homologous recombinationHeteroduplex formationDNA-dependent ATPase activity 1.10.150.20 72 30 81 2.33 2.84
1dxsA00 86.91 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 7 91 2.06 2.25
1x9xA00 86.61 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 11 90 2.26 2.50
1lb2B00 84.85 Pyrimidine metabolismPurine metabolismRNA polymeraseMetabolic pathwaysDNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 1.10.150.20 72 16 81 3.33 4.06
1wcnA01 84.81 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 18 91 3.08 3.36
1v38A00 84.66 Mus musculusSAM domain-containing protein SAMSN-1 1.10.150.50 78 16 75 1.89 2.50
2q0zX02 84.32 ATP-dependent helicase activityPre-mRNA-splicing helicase BRR2 [EC:3.6.1.-]Protein bindingU5 small nuclear ribonucleoprotein 200 kDa helicaseU5 snRNP 1.10.150.20 56 14 89 2.99 3.33
3h8mA00 83.80 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 10 83 2.55 3.07
1dgsA05 83.58 DNA ligaseThermus filiformis 1.10.150.20 69 16 79 2.80 3.51
2bcqA02 83.53 Nucleotide-excision repairNon-homologous end-joiningBase excision repairDNA polymerase lambdaDNA polymerase lambda subunit [EC:2.7.7.7 4.2.99.-] 1.10.150.20 54 9 81 2.99 3.68
1oxjA01 83.26 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.10.150.50 61 8 81 2.94 3.59
1z1vA00 83.04 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 11 81 2.11 2.59
2ztdA02 82.67 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 6 83 3.11 3.71
1b4fA00 82.31 Ephrin type-B receptor 2Homo sapiensTransmembrane-ephrin receptor activity 1.10.150.50 74 11 79 2.51 3.15
1bvsA02 82.04 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.150.20 70 6 84 3.14 3.73
1pk3A00 81.53 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 11 72 2.43 3.36
2nn4A00 80.81 Bacillus subtilisUncharacterized protein yqgQ 1.10.287.760 62 6 90 4.13 4.57
1ci4A00 80.62 Barrier-to-autointegration factorHomo sapiensResponse to virus 1.10.150.40 87 20 67 2.54 3.75
1dgsA06 79.78 DNA ligaseThermus filiformis 1.10.150.20 83 15 69 3.10 4.44
3kkaD00 78.80 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 6 82 3.11 3.78
1x66A01 78.79 Sequence-specific DNA binding transcription factor activityHemostasisOrgan morphogenesisHomo sapiensFriend leukemia integration 1 transcription factor 1.10.150.50 70 1 75 3.35 4.42
1go3F01 77.21 Pyrimidine metabolismPurine metabolismMethanocaldococcus jannaschiiDNA-directed RNA polymerase subunit F [EC:2.7.7.6]Uncharacterized protein MJ0039 1.10.150.80 60 15 80 3.01 3.76
1sv0D00 76.33 ETS-domain lackingNegative regulation of transcriptionRegulation of epidermal growth factor receptor signaling pathwayRegulation of Ras protein signal transductionDrosophila melanogaster 1.10.150.50 81 5 64 3.03 4.72
1mpgA02 75.35 Base excision repairDNA dealkylation involved in DNA repairDNA-3-methyladenine glycosylase 2DNA-3-methyladenine glycosylase II [EC:3.2.2.21]Protein binding 1.10.340.30 118 13 49 2.39 4.86
1ornA01 75.28 1.10.340.30 112 16 50 2.41 4.82
1kl9A02 74.43 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 1.10.150.190 92 8 57 2.83 4.91
1b22A00 71.69 Double-strand break repair via homologous recombinationIdentical protein bindingReciprocal meiotic recombinationDNA unwinding involved in replicationProtein homooligomerization 1.10.150.20 70 22 81 3.45 4.24
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1y88A02
YPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREIGLSAKKAREVIAEAKKVIGGS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1y88A02
YPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREIGLSAKKAREVIAEAKKVIGGS
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:25

Cut based on decision in database "DomChop" on "cathdb"