CATH Domain: 1y6hA00 XML data for domain: 1y6hA00

Molscript image for 1y6hA00
1y6hA00
PDB coordinates for domain 1y6hA00

PDB 1y6h, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.45 Peptide Deformylase
3.90.45.10 Peptide Deformylase Gene3D
3.90.45.10.3
3.90.45.10.3.3
3.90.45.10.3.3.1
3.90.45.10.3.3.1.1
3.90.45.10.3.3.1.1.1

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Segment boundaries for domain 1y6hA00

Chopping figure for domain 1y6hA00
DomainStart PDB ResidueStop PDB Residue
1y6hA00 1 177

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.90.45.10.3.3.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lmeA00 91.19 Thermotoga maritimaPeptide deformylase[EC:3.5.1.88] 3.90.45.10 153 44 84 1.10 1.30
1rl4B00 90.16 Plasmodium falciparum 3D7Formylmethionine deformylase, putativeFormylmethionine deformylase [EC:3.5.1.31]Cysteine and methionine metabolismGlyoxylate and dicarboxylate metabolism 3.90.45.10 156 32 90 1.41 1.56
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1y6hA00
SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER
IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT
KLFGFNETLDSSHNVLD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1y6hA00
SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER
IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT
KLFGFNETLDSSHNVLD
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:29

Assigning to "3.90.45.10" based on similarity with "1rn5B00" (NWSI: 100, NWO: 100, SPS: 97.34, SPO: 100, RMSD: 2.72)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1y6hA00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1y6hA00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1y6hA00"

Insertion by auto on 09 Mar 2006 22:25

Final ChopClose added based on similarity with "1rn5A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 100.00, SI: 100, SO: 100]