CATH Domain: 1y1vS01 XML data for domain: 1y1vS01

Molscript image for 1y1vS01
1y1vS01
PDB coordinates for domain 1y1vS01

PDB 1y1v, Chain S, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.20 Single Sheet
2.20.25 N-terminal domain of TfIIb
2.20.25.10 Gene3D
2.20.25.10.14
2.20.25.10.14.1
2.20.25.10.14.1.1
2.20.25.10.14.1.1.1
2.20.25.10.14.1.1.1.1

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Segment boundaries for domain 1y1vS01

Chopping figure for domain 1y1vS01
DomainStart PDB ResidueStop PDB Residue
1y1vS01 240 309

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.20.25.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tfiA00 82.27 Transcription from RNA polymerase II promoterTranscription elongation factor S-IITranscription elongation factor A protein 1General RNA polymerase II transcription factor activityHomo sapiens 2.20.25.10 50 62 71 3.05 4.27
2js4A01 71.66 Hypothetical proteinBordetella bronchisepticaUPF0434 protein BB2007 2.20.25.10 47 10 45 2.03 4.44
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1y1vS01
PLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1y1vS01
PLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:24

Cut based on decision in database "DomChop" on "cathdb"