CATH Domain: 1y0yA01 XML data for domain: 1y0yA01

Molscript image for 1y0yA01
1y0yA01
PDB coordinates for domain 1y0yA01

PDB 1y0y, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.10 Zn peptidases Gene3D
3.40.630.10.9
3.40.630.10.9.1
3.40.630.10.9.1.1
3.40.630.10.9.1.1.1
3.40.630.10.9.1.1.1.1

Segment boundaries for domain 1y0yA01

Chopping figure for domain 1y0yA01
DomainStart PDB ResidueStop PDB Residue
1y0yA01 6 71
1y0yA01 166 353
1y0yA02 72 165

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.630.10.9.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vheA01 91.45 Bacillus subtilisPutative aminopeptidase ysdC 3.40.630.10 268 37 92 1.44 1.56
1yloA01 90.43 Shigella flexneriPutative uncharacterized protein 3.40.630.10 254 30 95 1.53 1.61
2cf4A01 87.87 Pyrococcus horikoshiiPutative uncharacterized protein PH0519 3.40.630.10 236 36 92 1.69 1.83
3cpxB01 87.74 Aminopeptidase, M42 familyCytophaga hutchinsonii ATCC 33406 3.40.630.10 243 24 88 2.24 2.52
1vhoA01 87.37 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 3.40.630.10 237 31 90 2.38 2.63
2greA01 86.00 Aminopeptidase [EC:3.4.11.-]Deblocking aminopeptidaseBacillus cereus ATCC 14579 3.40.630.10 233 21 88 2.00 2.27
1cg2A01 82.68 Pseudomonas sp. RS-16Carboxypeptidase G2 3.40.630.10 279 20 83 2.51 3.01
2qyvA01 82.42 Arginine and proline metabolismGlutathione metabolismHistidine metabolismMetabolic pathwaysXaa-His dipeptidase. Metallo peptidase. MEROPS family M20C 3.40.630.10 250 15 90 2.92 3.24
3ct9B01 81.81 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.40.630.10 233 14 83 2.65 3.17
2glfA01 81.64 Thermotoga maritimaProbable M18 family aminopeptidase 1 3.40.630.10 304 16 76 2.48 3.22
1vgyA01 81.46 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.40.630.10 256 13 89 2.72 3.05
1xmbA01 81.27 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.40.630.10 274 14 83 2.75 3.30
1z2lB01 80.82 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.40.630.10 295 16 77 2.89 3.72
2ijzA01 80.45 Aminopeptidase [EC:3.4.11.-]Pseudomonas aeruginosaProbable M18 family aminopeptidase 2 3.40.630.10 272 8 87 2.83 3.25
2rb7A01 79.73 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.40.630.10 231 15 83 3.23 3.89
2v8hA01 78.68 Beta-alanine synthaseLachancea kluyveri 3.40.630.10 315 17 73 3.33 4.54
3kasA01 78.54 Integral to plasma membraneHematopoietic cell lineageExtracellular regionCoated pitEndocytosis 3.40.630.10 308 12 72 3.26 4.52
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|1y0yA01
MVDYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGEGPKVMIAAHMDQGRLERLGKHRFVSI
AFDDRIAVYTILEVAKQLKDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVTHLGKGTA
IKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVE
LMTKALENIHELKI    

Domain COMBS Sequence

>pdb|1y0yA01
MEVRNMVDYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGEGPKVMIAAHMDQGRLERLGKH
RFVSIAFDDRIAVYTILEVAKQLKDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVTHL
GKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDV
DATVELMTKALENIHELKI    

Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:23

Assigning to "3.40.630.10" based on similarity with "1y0rA01" (NWSI: 100, NWO: 100, SPS: 99.11, SPO: 99, RMSD: 0.15)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1y0yA01"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1y0yA01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1y0yA01"

Insertion by auto on 09 Mar 2006 20:43

Final ChopClose added based on similarity with "1xfoA" [LEE: 0, LME: 0, MR: 9, LG: 9, SS: 97.53, SI: 100, SO: 98.8795518207283]