CATH Domain: 1xvxA01 XML data for domain: 1xvxA01

Molscript image for 1xvxA01
1xvxA01
PDB coordinates for domain 1xvxA01

PDB 1xvx, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.13
3.40.190.10.13.1
3.40.190.10.13.1.1
3.40.190.10.13.1.1.1
3.40.190.10.13.1.1.1.1

Segment boundaries for domain 1xvxA01

Chopping figure for domain 1xvxA01
DomainStart PDB ResidueStop PDB Residue
1xvxA01 2 101
1xvxA01 228 282
1xvxA02 102 227
1xvxA02 283 312

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.40.190.10.13.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1atgA01 87.01 Azotobacter vinelandiiBinding protein 3.40.190.10 122 18 76 1.79 2.33
3gzgA01 86.43 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 21 76 1.91 2.49
1sbpA01 85.18 ABC transportersSalmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding protein 3.40.190.10 151 11 89 3.11 3.49
3cvgA01 83.49 3.40.190.10 144 18 80 2.83 3.54
3c9hA01 82.79 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)Iron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 189 18 80 2.62 3.26
1potA01 82.40 ABC transportersOuter membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding protein 3.40.190.10 166 12 89 3.05 3.42
1eu8A01 82.13 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein 3.40.190.10 190 21 80 2.78 3.45
1anfA01 81.08 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinDisaccharide binding 3.40.190.10 179 16 82 2.77 3.35
1ursB01 80.29 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius 3.40.190.10 186 12 80 2.98 3.70
1eljA01 80.19 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein 3.40.190.10 182 12 82 2.82 3.42
3thiA01 79.77 Paenibacillus thiaminolyticusThiaminase-1 3.40.190.10 175 9 82 2.77 3.37
1twyA01 79.55 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 9 70 2.86 4.07
1xs5A01 77.48 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 8 78 3.75 4.80
3fzvD02 76.92 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 12 63 2.72 4.26
2ql3A01 76.66 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 15 60 2.71 4.47
1i6aA01 76.17 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 8 67 3.30 4.92
1ixcA02 75.29 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 11 60 2.90 4.78
3fd3A01 75.13 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family 3.40.190.10 104 11 64 2.82 4.37
2qsxA01 75.05 Vibrio parahaemolyticusPutative transcriptional regulator, LysR family 3.40.190.10 94 9 57 2.71 4.72
1uthB01 74.11 LysR-type regulatory proteinBurkholderia sp. DNT 3.40.190.10 127 5 65 3.13 4.76
1ii5A01 73.26 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 128 3 74 3.47 4.68
2pyyB01 72.88 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 8 69 3.48 4.99
3cvgC01 71.87 3.40.190.10 81 14 45 2.15 4.76
Displaying entries 1 to 23 (page 1 of 1)


Domain ATOM Sequence

>pdb|1xvxA01
SNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDA
VTQAQVAQEYRPEHGRWTGIVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAASNPKLV    

Domain COMBS Sequence

>pdb|1xvxA01
ESNDSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLD
AVTQAQVAQEYRPEHGRWTGIVSISGGGVLASSKHPKEAQEFVKWITGKSGQDILRTNNAFEYAVGVDAASNPKLV    

Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:17

Assigning to "3.40.190.10" based on similarity with "1xvyA01" (NWSI: 88.8888888888889, NWO: 98.0769230769231, SPS: 96.92, SPO: 97, RMSD: 0.79)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1xvxA01"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1xvxA01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1xvxA01"

Insertion by auto on 06 Mar 2006 00:23

Cut based on decision in database "DomChop" on "cathdb"