CATH Domain: 1xtzA02 XML data for domain: 1xtzA02

Molscript image for 1xtzA02
1xtzA02
PDB coordinates for domain 1xtzA02

PDB 1xtz, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.10
3.30.70.260.10.1
3.30.70.260.10.1.1
3.30.70.260.10.1.1.1
3.30.70.260.10.1.1.1.1

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Segment boundaries for domain 1xtzA02

Chopping figure for domain 1xtzA02
DomainStart PDB ResidueStop PDB Residue
1xtzA01 19 151
1xtzA01 236 264
1xtzA02 152 235

Structural Neighbourhood (55 entries)

There are 55 matching structural neighberhood comparisons for CATH ID 3.30.70.260.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 55 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1i1gA02 84.08 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 14 76 2.35 3.08
2w25A02 80.98 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 16 78 2.66 3.39
1m1hA01 80.25 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 13 66 2.93 4.44
1vr6A01 80.18 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 10 76 2.68 3.52
2pn6A02 79.96 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 9 67 2.59 3.85
1no8A00 79.58 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 8 82 3.49 4.25
1r8hA00 79.46 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 7 87 3.78 4.33
2x3dF01 79.40 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 8 83 3.48 4.18
1q5yD00 79.37 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 8 83 3.82 4.58
2do0A01 79.34 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 7 82 3.07 3.74
2bopA00 79.32 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 11 88 3.85 4.36
2hiyB01 79.19 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 7 71 2.71 3.80
1eayD00 79.01 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 4 76 3.44 4.51
2rhsD06 78.91 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 3 79 3.57 4.49
1fxlA01 78.65 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 5 78 2.93 3.73
1fjeB02 78.64 NucleolinMesocricetus auratus 3.30.70.330 84 10 85 3.84 4.48
2j8sA06 78.61 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 9 67 2.64 3.90
2gx8C02 78.59 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 9 71 3.34 4.67
1fxlA02 78.51 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 2 80 3.10 3.83
1utaA00 78.30 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 7 80 3.42 4.22
1cvjA01 78.12 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 6 83 3.22 3.86
2nuhA00 78.04 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 9 69 2.98 4.30
1rwuA00 78.02 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 7 81 3.92 4.80
2vooA02 77.77 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 10 85 3.78 4.43
1nzaA00 77.77 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 14 68 2.70 3.92
2ia0B02 77.72 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 10 65 2.79 4.25
1x5oA01 77.67 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 8 82 3.04 3.68
1uw4A00 77.59 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 9 80 3.82 4.78
1rk8A00 77.40 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 1 87 3.92 4.49
1l3kA02 77.40 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 8 82 3.60 4.38
1h2vZ00 77.11 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 11 79 3.86 4.86
2j8sA02 77.05 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 103 7 67 3.38 4.97
1b7yB06 77.05 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 4 77 3.57 4.58
2pehA01 77.04 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 13 83 3.55 4.26
2j8sA03 77.00 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 4 75 3.25 4.33
1d8zA00 76.92 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 5 80 3.59 4.44
2hzcA00 76.88 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 7 78 3.52 4.50
1oiaA00 76.85 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 9 80 3.85 4.81
2qfjA02 76.67 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 5 80 3.41 4.24
1sqgA03 76.66 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 10 64 2.69 4.18
1cvjG02 76.49 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 8 85 3.86 4.53
1nu4A00 76.31 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 8 76 3.59 4.67
1lfwA03 76.21 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 8 67 3.05 4.55
1wj9A01 76.19 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 3 71 3.23 4.53
1lfpA03 75.99 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 15 75 3.67 4.89
1jmtA00 75.95 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 7 71 3.23 4.52
1ufwA00 75.85 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 72 3.57 4.92
1x5uA01 75.57 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 5 80 3.98 4.92
2fgcA03 75.47 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 1 69 3.35 4.85
3feyB00 75.42 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 9 71 3.41 4.79
2qmwA03 75.18 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 12 78 3.89 4.95
1jx4A02 74.98 DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]DNA polymerase IVSulfolobus solfataricus 3.30.70.270 96 15 62 2.73 4.37
1sxlA00 74.12 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 2 77 3.75 4.85
1gmuA01 73.12 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 5 65 3.03 4.63
1harA02 72.50 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 5 71 3.43 4.80
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Displaying entries 1 to 55 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1xtzA02
HLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGV
VETG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1xtzA02
HLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGV
VETG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 20 Jul 2007 16:13

Assigning to "3.30.70.260" based on similarity with "1lk5A02"

Flow stage update by auto on 20 Jul 2007 06:43

No in_process hits for Domain "1xtzA02" ready to be processed

Flow stage update by auto on 20 Jul 2007 06:43

NW result present for Domain "1xtzA02"

Flow stage update by auto on 14 Jul 2007 06:01

All required files are present for Domain "1xtzA02"

Flow stage update by auto on 13 Jul 2007 18:42

Beginning processing for Domain "1xtzA02"

Insertion by auto on 13 Jul 2007 00:28

Final ChopClose added based on similarity with "1lk5A"