CATH Domain: 1xo1A01 XML data for domain: 1xo1A01

Molscript image for 1xo1A01
1xo1A01
PDB coordinates for domain 1xo1A01

PDB 1xo1, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.7
1.10.150.20.7.1
1.10.150.20.7.1.1
1.10.150.20.7.1.1.1
1.10.150.20.7.1.1.1.1

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Segment boundaries for domain 1xo1A01

Chopping figure for domain 1xo1A01
DomainStart PDB ResidueStop PDB Residue
1xo1A01 181 260
1xo1A02 20 179
1xo1A02 261 286

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.10.150.20.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dgsA06 81.42 DNA ligaseThermus filiformis 1.10.150.20 83 11 78 3.37 4.30
2ztdA02 80.41 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 8 72 2.73 3.77
1b43A02 80.24 Flap endonuclease-1 [EC:3.-.-.-]Pyrococcus furiosusDNA replicationBase excision repairFlap structure-specific endonuclease 1.10.150.20 61 24 73 3.17 4.30
1bvsA02 79.59 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.150.20 70 10 73 3.66 4.96
2fmpA02 76.62 DNA-dependent DNA replicationDNA-directed DNA polymerase activityDNA polymerase betaCytoplasmBase excision repair 1.10.150.20 57 14 71 3.51 4.93
2nyvA02 75.66 Phosphoglycolate phosphatase [EC:3.1.3.18]Metabolic pathwaysGlyoxylate and dicarboxylate metabolismAquifex aeolicusPhosphoglycolate phosphatase 1.10.150.240 64 6 72 3.61 4.98
1bgxT02 75.37 Thermus aquaticusDNA polymerase I, thermostable 1.10.150.20 73 20 82 3.17 3.84
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1xo1A01
YEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1xo1A01
YEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:52

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"