CATH Domain: 1xmbA02 XML data for domain: 1xmbA02

Molscript image for 1xmbA02
1xmbA02
PDB coordinates for domain 1xmbA02

PDB 1xmb, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.360 Gene3D
3.30.70.360.7
3.30.70.360.7.1
3.30.70.360.7.1.1
3.30.70.360.7.1.1.1
3.30.70.360.7.1.1.1.1

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Segment boundaries for domain 1xmbA02

Chopping figure for domain 1xmbA02
DomainStart PDB ResidueStop PDB Residue
1xmbA01 37 215
1xmbA01 334 428
1xmbA02 216 333

Structural Neighbourhood (39 entries)

There are 39 matching structural neighberhood comparisons for CATH ID 3.30.70.360.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 39 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cg2A02 86.28 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 17 80 1.83 2.26
2gx8C02 82.38 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 8 73 2.81 3.82
2ia0B02 82.10 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 9 73 2.30 3.14
3c19A01 81.94 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 7 77 2.64 3.42
3ct9A02 81.63 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.30.70.360 104 15 82 2.89 3.49
2nuhA00 81.34 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 6 69 2.54 3.67
1nzaA00 81.30 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 6 71 2.93 4.08
1u0sA00 80.68 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 8 72 2.28 3.15
2iboA00 80.54 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 13 74 2.59 3.49
2j8sA07 80.53 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1440 94 8 83 3.80 4.57
2epiB00 79.87 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 6 76 3.28 4.30
2j8sA06 79.50 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 6 83 3.53 4.21
1q8kA03 79.28 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 3.30.70.1130 116 7 77 2.68 3.45
1vk8A00 78.97 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 5 74 2.92 3.93
1u7lA01 78.94 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 7 74 3.46 4.66
1yqhB00 78.55 IG hypothetical 16092Bacillus cereus ATCC 14579 3.30.70.930 98 14 78 2.61 3.34
1vr6A01 78.35 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 12 72 3.00 4.15
1in0A01 78.33 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 12 69 2.60 3.75
3bm7A00 78.32 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 101 3 88 4.15 4.71
2fiuA00 78.26 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.30.70.900 93 7 78 3.41 4.36
2w9rA00 77.74 ATP-dependent Clp protease adaptor protein ClpSProtein bindingEscherichia coli K-12ATP-dependent Clp protease adapter protein clpS 3.30.1390.10 97 7 74 3.56 4.79
2w25A02 77.72 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 69 3.09 4.46
1utaA00 77.66 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 5 73 3.52 4.80
1x7vC00 77.65 Pseudomonas aeruginosaPutative uncharacterized protein 3.30.70.900 97 4 86 4.29 4.98
2j8sA03 77.59 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 7 85 4.25 4.99
2hhvA03 77.39 Pyrimidine metabolismDNA replicationNucleotide excision repairGeobacillus kaustophilusPurine metabolism 3.30.70.370 126 4 65 3.19 4.90
1lxjA00 77.33 CytoplasmNucleusSaccharomyces cerevisiaeUPF0045 protein ECM15Fungal-type cell wall organization 3.30.70.930 101 4 76 3.26 4.28
1q5yD00 77.17 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 17 73 3.20 4.37
1s99A01 76.84 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 7 73 3.57 4.87
2pd1A01 76.77 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 7 83 3.90 4.69
1vjhA00 76.40 Uncharacterized protein At1g24000Arabidopsis thaliana 3.30.530.20 118 4 61 3.05 4.93
1lfwA03 76.32 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 3 62 2.67 4.28
2rhsD06 75.95 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 9 71 3.06 4.29
1iujB00 75.86 TT1380 proteinThermus thermophilus 3.30.70.900 103 5 88 4.17 4.72
1q8bA00 75.54 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 7 84 4.18 4.97
1rwuA00 75.03 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 8 71 3.04 4.26
2od4B01 75.01 3.30.70.900 81 2 76 3.69 4.84
1qd1A02 74.80 Formimidoyltransferase-cyclodeaminaseOne carbon pool by folateSus scrofaFormiminotetrahydrofolate cyclodeaminase [EC:4.3.1.4]Glutamate formiminotransferase [EC:2.1.2.5] 3.30.70.670 139 11 57 2.84 4.93
2vqeJ00 74.30 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 2 72 3.48 4.81
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Displaying entries 1 to 39 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1xmbA02
AGAGVFEAVITGKTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNPDSITIGGTLRAFTGFTQLQQRVKEVITKQ
AAVHRCNASVNLTPNGREPMP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1xmbA02
AGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAF
TGFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMP
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 22 Feb 2008 05:39

Assigning to "3.30.70.360" based on similarity with "2q43A02"

Flow stage update by auto on 22 Feb 2008 05:18

No in_process hits for Domain "1xmbA02" ready to be processed

Flow stage update by auto on 22 Feb 2008 05:18

NW result present for Domain "1xmbA02"

Flow stage update by auto on 20 Feb 2008 11:08

All required files are present for Domain "1xmbA02"

Flow stage update by auto on 19 Feb 2008 17:05

Beginning processing for Domain "1xmbA02"

Insertion by lewis on 19 Feb 2008 14:40

Accepting this chopping because it is just a repeat of the previous chopping which I only removed because the PDB's residues have been renumbered.