CATH Domain: 1xlqA00 XML data for domain: 1xlqA00

Molscript image for 1xlqA00
1xlqA00
PDB coordinates for domain 1xlqA00

PDB 1xlq, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.7
3.10.20.30.7.1
3.10.20.30.7.1.1
3.10.20.30.7.1.1.1
3.10.20.30.7.1.1.1.1

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Segment boundaries for domain 1xlqA00

Chopping figure for domain 1xlqA00
DomainStart PDB ResidueStop PDB Residue
1xlqA00 1 106

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.10.20.30.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1i7hC00 90.53 2Fe-2S ferredoxinFerredoxin, 2Fe-2SProtein bindingEscherichia coli K-12 3.10.20.30 108 33 93 1.95 2.09
1l5pA00 89.52 FerredoxinTrichomonas vaginalis 3.10.20.30 93 27 87 1.94 2.21
2piaA03 81.09 Burkholderia cepaciaPhthalate dioxygenase reductase 3.10.20.30 96 10 79 3.22 4.06
1vlbA01 79.94 Desulfovibrio gigasAldehyde oxidoreductase 3.10.20.30 74 16 64 2.29 3.57
2h88B01 78.88 Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase (ubiquinone) iron-sulfur protein [EC:1.3.5.1]Gallus gallusMetabolic pathways 3.10.20.30 107 10 73 3.11 4.21
2bs2B01 77.98 Benzoate degradation via CoA ligationButanoate metabolismOxidative phosphorylationTwo-component systemCitrate cycle (TCA cycle) 3.10.20.30 106 8 75 3.27 4.33
1wm3A00 75.66 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 8 63 3.03 4.79
1y8rC00 75.56 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 9 65 3.21 4.93
1wx9A00 75.53 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 9 66 2.82 4.21
1wxmA01 75.30 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 19 65 2.82 4.33
2bwfA00 75.24 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 11 64 2.92 4.55
1wgdA00 75.22 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 8 66 3.14 4.69
1v5oA00 75.04 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 7 66 2.87 4.28
1uh6A00 74.99 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 7 63 2.84 4.49
1z2mA01 74.86 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 6 65 3.08 4.73
2gbjB00 74.53 3.10.20.90 84 7 67 3.32 4.89
2kd0A01 74.51 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 5 62 2.95 4.74
1j8cA00 73.82 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 9 62 2.91 4.67
2fnjB00 73.05 Renal cell carcinomaPathways in cancerUbiquitin mediated proteolysisMus musculusTranscription elongation factor B polypeptide 2 3.10.20.90 98 5 65 2.89 4.44
1wxsA00 73.04 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 6 67 3.35 4.93
1p1aA00 72.87 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 4 66 3.19 4.76
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1xlqA00
SKVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKP
NSRLCCQIIMTPELDGIVVDVPDRQW
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1xlqA00
SKVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKP
NSRLCCQIIMTPELDGIVVDVPDRQW
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:02

Assigning to "3.10.20.30" based on similarity with "1oqrB00" (NWSI: 100, NWO: 100, SPS: 98.19, SPO: 100, RMSD: 0.49)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1xlqA00"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1xlqA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1xlqA00"

Insertion by auto on 09 Mar 2006 17:53

Final ChopClose added based on similarity with "1oqrA" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 98.27, SI: 100, SO: 100]