CATH Domain: 1x54A01 XML data for domain: 1x54A01

Molscript image for 1x54A01
1x54A01
PDB coordinates for domain 1x54A01

PDB 1x54, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.2
2.40.50.140.2.1
2.40.50.140.2.1.1
2.40.50.140.2.1.1.1
2.40.50.140.2.1.1.1.1

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Segment boundaries for domain 1x54A01

Chopping figure for domain 1x54A01
DomainStart PDB ResidueStop PDB Residue
1x54A01 1 104
1x54A02 105 434

Structural Neighbourhood (25 entries)

There are 25 matching structural neighberhood comparisons for CATH ID 2.40.50.140.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 25 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1l0wA01 90.52 Aminoacyl-tRNA biosynthesisAspartyl-tRNA synthetase [EC:6.1.1.12]Thermus thermophilusAspartyl-tRNA synthetase 2.40.50.140 106 27 95 1.74 1.83
1n9wA01 90.35 Aminoacyl-tRNA biosynthesisNondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]Aspartyl-tRNA synthetase 2Thermus thermophilus 2.40.50.140 92 32 87 1.64 1.87
1ltlA02 86.47 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 13 83 2.98 3.56
1nnxA00 85.46 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 13 82 2.86 3.46
2oq0B02 84.47 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 8 79 2.07 2.59
1eovA01 84.38 Aspartate-tRNA ligase activityIdentical protein bindingNucleusAspartyl-tRNA synthetase, cytoplasmicAspartyl-tRNA aminoacylation 2.40.50.140 134 24 77 1.94 2.50
3lgjB00 84.24 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 14 79 3.82 4.79
1wocC00 83.56 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 13 75 2.66 3.50
1e1oA01 83.18 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]CytosolLysyl-tRNA aminoacylation 2.40.50.140 140 18 72 2.47 3.39
1bbuA01 82.96 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]Protein bindingLysyl-tRNA aminoacylation 2.40.50.140 140 18 72 2.49 3.42
1lm0A00 82.75 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 9 82 2.82 3.41
1fguB01 82.67 Replication factor A1DNA-dependent DNA replicationDNA replicationNucleotide excision repairReplication protein A 70 kDa DNA-binding subunit 2.40.50.140 105 14 85 2.96 3.45
2hqlA01 82.27 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 9 74 3.16 4.27
1miuA03 81.07 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 7 82 3.60 4.34
3bjuB01 80.80 Lysine-tRNA ligase activityLysyl-tRNA synthetaseSoluble fractionHomo sapiensLysyl-tRNA aminoacylation 2.40.50.140 142 14 71 2.65 3.69
1cukA01 78.82 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 13 63 2.81 4.43
2jqoA01 77.38 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 12 63 2.41 3.80
1fjgQ00 76.76 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 9 65 2.92 4.47
2zteA01 76.27 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 7 62 2.76 4.42
3hksA02 75.63 NucleusEukaryotic translation initiation factor 5A-2Host programmed cell death induced by symbiontTranslational initiationDefense response to bacterium 2.40.50.140 75 6 69 3.40 4.91
1hh2P02 74.11 N utilization substance protein AThermotoga maritima 2.40.50.140 63 14 59 2.92 4.90
3d31A02 73.29 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 17 44 2.04 4.61
1bkbA02 73.13 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 9 59 2.98 5.00
1g29102 72.98 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 11 43 1.99 4.60
1oxxK02 71.64 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 15 41 1.94 4.69
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Displaying entries 1 to 25 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1x54A01
MIEKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKA
DERAPGGAEVHVEKLEVIQAVSEF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1x54A01
MIEKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKA
DERAPGGAEVHVEKLEVIQAVSEF
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 15 Aug 2007 00:23

Assigning to "2.40.50.140" based on similarity with "1x55A01"

Flow stage update by auto on 15 Aug 2007 00:01

No in_process hits for Domain "1x54A01" ready to be processed

Update comment by auto on 14 Aug 2007 22:47

Domain "1x54A01" hits Domain "1x55A01" (100% over 100%) which is currently in process

Flow stage update by auto on 19 Jul 2007 22:49

Domain "1x54A01" hits Domain "1x56A01" (100% over 100%) which is currently in process

Flow stage update by auto on 19 Jul 2007 22:49

NW result present for Domain "1x54A01"

Flow stage update by auto on 14 Jul 2007 06:01

All required files are present for Domain "1x54A01"

Flow stage update by auto on 13 Jul 2007 18:42

Beginning processing for Domain "1x54A01"

Insertion by auto on 13 Jul 2007 03:10

Final ChopClose added based on similarity with "1b8aA"