CATH Domain: 1wzvA00

1wzvA00

PDB 1wzv, Chain A, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.10	Roll
3.10.110	Ubiquitin Conjugating Enzyme
3.10.110.10	Ubiquitin Conjugating Enzyme	Gene3D
3.10.110.10.8
3.10.110.10.8.1
3.10.110.10.8.1.1
3.10.110.10.8.1.1.1
3.10.110.10.8.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1wzvA00

Domain	Start PDB Residue	Stop PDB Residue
1wzvA00	2	151

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.10.110.10.8.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1br7003	85.15		3.10.110.10	117	35	76	1.48	1.93
	1s1qA00	78.01	EndocytosisMultivesicular bodyPlasma membraneNucleolusTumor susceptibility gene 101 protein	3.10.110.10	137	13	73	3.66	4.99

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Domain ATOM Sequence

>pdb|1wzvA00
ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN
GQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRP

BLAST against CATH

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Domain COMBS Sequence

>pdb|1wzvA00
GSHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN
VDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:16

Assigning to "3.10.110.10" based on similarity with "1wzwA00"