CATH Domain: 1wywB00 XML data for domain: 1wywB00

Molscript image for 1wywB00
1wywB00
PDB coordinates for domain 1wywB00

PDB 1wyw, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.90 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 Gene3D
3.10.20.90.14
3.10.20.90.14.1
3.10.20.90.14.1.1
3.10.20.90.14.1.1.1
3.10.20.90.14.1.1.1.1

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Segment boundaries for domain 1wywB00

Chopping figure for domain 1wywB00
DomainStart PDB ResidueStop PDB Residue
1wywB00 19 97

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.10.20.90.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1y8rC00 94.07 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 100 94 1.40 1.49
1z2mA02 91.36 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 18 96 1.22 1.27
1wh3A01 90.17 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 19 89 1.17 1.30
1yqbA01 89.69 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 22 89 1.39 1.55
1m94A00 88.47 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 13 92 1.97 2.13
2kd0A01 88.30 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 19 89 1.52 1.69
1wx9A00 87.50 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 20 90 2.29 2.52
1p1aA00 86.79 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 16 92 2.96 3.18
3ge3C00 85.07 Pseudomonas mendocinaToluene-4-monooxygenase system protein B 3.10.20.270 83 13 90 2.60 2.88
1h8cA00 85.02 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 8 91 2.28 2.49
1t0yA00 84.99 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 17 87 2.09 2.38
1z2mA01 84.84 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 16 92 2.28 2.47
1wxmA01 84.45 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 9 84 2.00 2.36
1uh6A00 84.11 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 11 75 1.92 2.56
1wgdA00 83.96 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 15 84 2.48 2.92
1v5oA00 83.64 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 15 77 2.73 3.52
2rd0A01 83.56 Jak-STAT signaling pathwayAldosterone-regulated sodium reabsorptionNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathway 3.10.20.90 100 8 77 3.32 4.31
1wmhA00 83.53 Tight junctionInsulin signaling pathwayEndocytosisVesicle-mediated transportProtein binding 3.10.20.240 83 7 85 2.31 2.70
1ip9A00 83.11 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 13 83 2.32 2.78
1v5tA00 83.08 Mus musculusUbiquitin-like domain-containing CTD phosphatase 1Protein phosphatase [EC:3.1.3.16] 3.10.20.90 90 11 86 2.76 3.18
2c60A01 82.84 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 5 86 2.38 2.77
2nptB01 82.77 Mitogen-activated protein kinase kinase kinase 2Gap junctionMitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25]GnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 7 86 2.52 2.92
1se9A00 82.58 Membrane-anchored ubiquitin-fold protein 1Arabidopsis thaliana 3.10.20.90 101 16 78 2.91 3.72
1k8rB00 82.34 Plasma membraneInduction of conjugation upon nitrogen starvationProtein bindingSchizosaccharomyces pombeProtein kinase byr2 3.10.20.90 82 7 78 3.58 4.59
1wmhB00 81.97 Partitioning defective 6 homolog alphaTranscription factor bindingViral reproductionHomo sapiens 3.10.20.240 82 5 89 2.61 2.93
2r2oA00 81.92 Semaphorin receptor bindingPlexin BSemaphorin receptor activityHomo sapiensPlexin-B1 3.10.20.90 98 11 75 2.13 2.82
1j8cA00 81.14 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 17 71 2.00 2.78
1v86A00 81.10 Mus musculusPutative uncharacterized protein 3.10.20.90 95 18 77 2.25 2.89
2kfjA00 80.67 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipInvasive growth in response to glucose limitationCell division control protein 24 3.10.20.240 86 7 82 2.71 3.28
1v2yA00 80.15 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 12 75 3.10 4.12
1oqyA01 79.57 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 18 89 3.69 4.11
1wxsA00 79.26 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 11 89 3.20 3.56
2nptC01 78.77 Homo sapiensProtein bindingDual specificity mitogen-activated protein kinase kinase 5 3.10.20.240 88 6 77 2.80 3.62
1s3sH00 78.63 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 7 68 1.88 2.76
2zjdA00 78.58 Microtubule-associated protein 1 light chainHomo sapiensMicrotubule-associated proteins 1A/1B light chain 3BProtein binding 3.10.20.90 121 11 65 3.21 4.92
1y8qD03 77.80 SUMO-activating enzyme subunit 2Ubiquitin-like 1-activating enzyme E1 B [EC:6.3.2.19]Enzyme activator activityHomo sapiensUbiquitin mediated proteolysis 3.10.290.20 105 7 62 2.26 3.60
1i42A00 77.03 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 89 7 80 3.57 4.41
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1wywB00
GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1wywB00
GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:00

Assigning to "3.10.20.90" based on similarity with "1tgzB00" (NWSI: 100, NWO: 98.75, SPS: 94.67, SPO: 98, RMSD: 1.72)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1wywB00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "1wywB00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1wywB00"

Insertion by auto on 10 Mar 2006 05:37

Final ChopClose added based on similarity with "1y8rC" [LEE: 0, LME: 0, MR: 5, LG: 5, SS: 94.07, SI: 100, SO: 100]