CATH Domain: 1wocC00 XML data for domain: 1wocC00

Molscript image for 1wocC00
1wocC00
PDB coordinates for domain 1wocC00

PDB 1woc, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.15
2.40.50.140.15.1
2.40.50.140.15.1.1
2.40.50.140.15.1.1.1
2.40.50.140.15.1.1.1.1

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Segment boundaries for domain 1wocC00

Chopping figure for domain 1wocC00
DomainStart PDB ResidueStop PDB Residue
1wocC00 2 101

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 2.40.50.140.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v1qA00 92.48 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 110 96 89 2.14 2.40
3lgjB00 86.75 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 17 89 2.12 2.36
2vw9B00 85.93 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 15 92 2.91 3.15
3ullA00 85.81 DNA replicationPositive regulation of helicase activityMitochondrial nucleoidSingle-stranded DNA-binding protein, mitochondrialHomologous recombination 2.40.50.140 106 17 90 3.03 3.35
1ltlA02 85.04 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 11 85 3.17 3.73
1x3eA00 84.92 Homologous recombinationDNA replicationMycobacterium smegmatis str. MC2 155Single-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 110 15 86 3.72 4.31
1n9wA01 83.15 Aminoacyl-tRNA biosynthesisNondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]Aspartyl-tRNA synthetase 2Thermus thermophilus 2.40.50.140 92 11 74 2.63 3.53
2hqlA01 82.98 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 10 88 3.43 3.86
2oq0B02 81.34 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 6 72 2.11 2.91
1gm5A03 80.98 Thermotoga maritimaHomologous recombinationATP-dependent DNA helicase RecG [EC:3.6.1.-]ATP-dependent DNA helicase 2.40.50.140 102 11 78 2.72 3.47
1nnxA00 80.77 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 10 70 2.50 3.55
1fguB01 80.59 Replication factor A1DNA-dependent DNA replicationDNA replicationNucleotide excision repairReplication protein A 70 kDa DNA-binding subunit 2.40.50.140 105 5 80 2.64 3.26
1lm0A00 79.08 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 14 73 2.73 3.73
1miuA03 78.67 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 9 72 2.99 4.12
1fjgQ00 78.04 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 8 71 3.00 4.22
1eovA01 77.44 Aspartate-tRNA ligase activityIdentical protein bindingNucleusAspartyl-tRNA synthetase, cytoplasmicAspartyl-tRNA aminoacylation 2.40.50.140 134 10 61 2.93 4.79
1e1oA01 77.26 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]CytosolLysyl-tRNA aminoacylation 2.40.50.140 140 8 55 2.12 3.81
1bbuA01 76.95 Aminoacyl-tRNA biosynthesisMembraneLysyl-tRNA synthetase, class II [EC:6.1.1.6]Protein bindingLysyl-tRNA aminoacylation 2.40.50.140 140 8 55 2.14 3.84
3bjuB01 76.94 Lysine-tRNA ligase activityLysyl-tRNA synthetaseSoluble fractionHomo sapiensLysyl-tRNA aminoacylation 2.40.50.140 142 13 54 2.35 4.28
1cukA01 76.76 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 10 66 2.96 4.46
2zteA01 76.73 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 13 64 2.66 4.14
1t9hA01 76.73 Ribosome biogenesis GTPase [EC:3.6.1.-]Putative ribosome biogenesis GTPase RsgABacillus subtilis 2.40.50.140 73 10 69 3.43 4.94
1jmcA02 76.71 Replication factor A1DNA-dependent DNA replicationNucleotide excision repairDNA replicationPML body 2.40.50.140 124 6 64 2.48 3.84
2ztdA01 76.55 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 12 65 2.69 4.12
1xjvA01 74.42 Protection of telomeres protein 1Negative regulation of telomerase activitySingle-stranded telomeric DNA bindingDNA duplex unwindingTelomere formation via telomerase 2.40.50.140 142 7 58 2.85 4.88
1uebA02 74.28 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 7 63 2.98 4.71
3d31A02 73.62 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 15 45 2.14 4.66
3cp0A00 73.49 Corynebacterium glutamicumMembrane protein implicated in regulation of membrane protease activity 2.40.50.140 62 6 60 2.86 4.75
1g29102 73.03 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 8 45 1.88 4.09
1khiA02 72.53 Neurospora crassaWoronin body major protein 2.40.50.140 72 8 63 3.06 4.84
1bkbA02 72.20 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 6 61 2.69 4.39
2p5zX04 69.66 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 10 57 2.83 4.95
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Displaying entries 1 to 32 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1wocC00
TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQPVIVSGHENQAITHSITVGSRITVQGFISCHK
AKNGLSKVLHAEQIELID
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1wocC00
TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQXPVIVSGHENQAITHSITVGSRITVQGFISCH
KAKNGLSKXVLHAEQIELIDSGD
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:46

Assigning to "2.40.50.140" based on similarity with "1wocD00" (NWSI: 98.0582524271845, NWO: 100, SPS: 95.01, SPO: 98, RMSD: 1.00)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1wocC00"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1wocC00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1wocC00"

Insertion by auto on 06 Mar 2006 00:15

Cut based on decision in database "DomChop" on "cathdb"