CATH Domain: 1wkrA02 XML data for domain: 1wkrA02

Molscript image for 1wkrA02
1wkrA02
PDB coordinates for domain 1wkrA02

PDB 1wkr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.9
2.40.70.10.9.1
2.40.70.10.9.1.1
2.40.70.10.9.1.1.1
2.40.70.10.9.1.1.1.1

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Segment boundaries for domain 1wkrA02

Chopping figure for domain 1wkrA02
DomainStart PDB ResidueStop PDB Residue
1wkrA01 1 170
1wkrA02 171 340

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.70.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hrnA02 85.82 Renin-angiotensin systemAngiotensin maturationRegulation of MAPKKK cascadeExtracellular spaceRenin 2.40.70.10 158 22 87 2.51 2.88
1dpjA02 85.25 Cellular response to starvationSporulation resulting in formation of a cellular sporeProteolysis involved in cellular protein catabolic processFungal-type vacuole lumenSaccharopepsin 2.40.70.10 154 26 87 2.42 2.78
1mppA02 81.33 Rhizomucor pusillusMucorpepsin 2.40.70.10 175 19 88 3.50 3.95
2zjlA02 80.91 Beta-secretase 1Integral to plasma membraneBeta-aspartyl-peptidase activityProtein bindingBeta-amyloid metabolic process 2.40.70.10 197 16 68 2.79 4.07
1pfzA02 79.62 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 213 17 70 2.61 3.71
1lyaB00 79.49 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 21 63 2.75 4.33
1t6eX02 78.96 Triticum aestivumXylanase inhibitor 2.40.70.10 187 14 83 3.88 4.65
1b5fB00 75.77 Preprocardosin ACynara cardunculus 2.40.70.10 87 22 49 2.47 5.00
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1wkrA02
TGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQY
ANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLA
TTSFTTATSN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1wkrA02
TGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQY
ANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLA
TTSFTTATSN
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:14

Cut based on decision in database "DomChop" on "cathdb"