CATH Domain: 1wkrA01 XML data for domain: 1wkrA01

Molscript image for 1wkrA01
1wkrA01
PDB coordinates for domain 1wkrA01

PDB 1wkr, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.8
2.40.70.10.8.1
2.40.70.10.8.1.1
2.40.70.10.8.1.1.1
2.40.70.10.8.1.1.1.1

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Segment boundaries for domain 1wkrA01

Chopping figure for domain 1wkrA01
DomainStart PDB ResidueStop PDB Residue
1wkrA01 1 170
1wkrA02 171 340

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.40.70.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mppA01 88.47 Rhizomucor pusillusMucorpepsin 2.40.70.10 181 27 86 1.76 2.03
1j71A01 86.79 Candida tropicalisCandidapepsin 2.40.70.10 173 22 87 1.55 1.78
1pfzB01 83.39 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 155 23 78 1.94 2.48
1b5fC00 82.51 Preprocardosin ACynara cardunculus 2.40.70.10 238 26 65 1.65 2.52
1t6eX01 79.63 Triticum aestivumXylanase inhibitor 2.40.70.10 174 10 76 2.86 3.74
1lyaA00 76.37 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 97 25 48 1.83 3.79
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1wkrA01
AAGSVPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLG
SLTIPKQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL
TFGATDSSKY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1wkrA01
AAGSVPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLG
SLTIPKQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL
TFGATDSSKY
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:14

Cut based on decision in database "DomChop" on "cathdb"