CATH Domain: 1whoA00 XML data for domain: 1whoA00

Molscript image for 1whoA00
1whoA00
PDB coordinates for domain 1whoA00

PDB 1who, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.760 Gene3D
2.60.40.760.1
2.60.40.760.1.1
2.60.40.760.1.1.1
2.60.40.760.1.1.1.1
2.60.40.760.1.1.1.1.1

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Segment boundaries for domain 1whoA00

Chopping figure for domain 1whoA00
DomainStart PDB ResidueStop PDB Residue
1whoA00 1 94

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.40.760.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o75A04 75.82 Treponema pallidum47 kDa membrane antigen 2.60.40.1270 82 9 80 3.82 4.72
1dceA02 75.78 Rattus norvegicusRab geranylgeranyltransferase activityProtein geranylgeranyltransferase type II [EC:2.5.1.60]Geranylgeranyl transferase type-2 subunit alpha 2.60.40.1130 103 8 81 3.95 4.84
1p5uA02 75.48 Yersinia pestisChaperone protein caf1MProtein binding 2.60.40.1070 84 7 69 3.33 4.82
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1whoA00
VPKVTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDD
VVPEKYTIGATYAP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1whoA00
VPKVTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDD
VVPEKYTIGATYAPEE
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1who000" to "1whoA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"