CATH Domain: 1w0uA00 XML data for domain: 1w0uA00

Molscript image for 1w0uA00
1w0uA00
PDB coordinates for domain 1w0uA00

PDB 1w0u, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.5
1.10.10.60.5.1
1.10.10.60.5.1.1
1.10.10.60.5.1.1.1
1.10.10.60.5.1.1.1.1

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Segment boundaries for domain 1w0uA00

Chopping figure for domain 1w0uA00
DomainStart PDB ResidueStop PDB Residue
1w0uA00 446 500

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 1.10.10.60.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w0tA00 95.88 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 59 94 0.78 0.82
1iv6A00 91.02 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 56 96 1.76 1.82
1gv2A02 89.56 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 32 83 1.52 1.82
1o4xA02 85.93 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 5 89 3.28 3.68
2hddB00 85.90 Trunk segmentationImaginal disc-derived female genitalia developmentDrosophila melanogasterImaginal disc-derived male genitalia developmentProtein binding 1.10.10.60 56 9 91 3.08 3.38
1au7A02 85.61 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 1 91 3.45 3.78
2k9nA02 85.28 MYB24Trichomonas vaginalis 1.10.10.60 54 25 90 2.75 3.02
1mh3A03 85.15 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 3 87 3.72 4.26
1tc3C00 85.10 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 9 90 3.09 3.40
1e3oC02 85.03 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 8 81 2.45 2.99
1jggA00 84.87 Trunk segmentationMotor axon guidanceMuscle organ developmentHomeobox even-skipped homolog proteinSegmentation protein even-skipped 1.10.10.60 57 9 91 3.50 3.84
1b8iB00 84.11 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 5 87 3.40 3.87
1fexA00 84.06 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 16 86 2.54 2.94
2dmqA01 84.03 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 3 84 3.17 3.76
1k61A00 83.76 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 60 12 86 3.33 3.84
1nk3P00 82.79 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 5 82 3.42 4.14
1b8iA00 82.53 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 9 88 4.17 4.70
1b72A00 81.03 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 5 80 3.42 4.23
1t56A01 80.50 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 6 72 3.22 4.43
2i10A01 80.16 Rhodococcus jostii RHA1Transcriptional regulator, TetR family protein 1.10.10.60 58 7 77 2.81 3.62
1wh5A00 79.55 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 18 67 2.54 3.76
1hlvA01 79.48 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 58 9 81 3.24 4.00
1ic8A02 79.38 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 7 68 2.88 4.18
1le8B00 79.04 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 10 74 3.51 4.72
2np3B01 78.99 Streptomyces coelicolorPutative TetR-family regulator 1.10.10.60 60 3 83 3.76 4.51
1mw7A01 78.52 Helicobacter pyloriUPF0082 protein HP_0162 1.10.10.200 58 9 87 4.22 4.80
1w1wE00 78.25 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 10 71 3.54 4.96
1ignB02 78.21 Chromatin silencing at telomereMyb-like DNA-binding protein RAP1Protein bindingProtection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 92 23 54 2.03 3.74
1pufB00 78.16 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 7 73 3.61 4.88
3bqyA01 78.03 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 48 4 83 3.69 4.41
1ignA01 77.97 Chromatin silencing at telomereProtein bindingMyb-like DNA-binding protein RAP1Protection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 93 14 54 2.45 4.47
1mnmC00 77.96 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 12 71 3.41 4.77
2ibdA01 77.04 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 2 63 3.03 4.76
3dewA01 76.97 TetR/AcrR family transcriptional regulatorTranscriptional regulator, TetR familyGeobacter sulfurreducens 1.10.10.60 50 4 76 3.66 4.79
3c2bA01 76.41 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 7 67 2.79 4.15
1iufA02 74.58 Centromeric DNA bindingHistone modificationARS-binding protein 1Schizosaccharomyces pombeCondensed nuclear chromosome, centromeric region 1.10.10.60 64 5 79 3.71 4.66
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Displaying entries 1 to 36 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1w0uA00
KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1w0uA00
KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 15 Aug 2007 01:47

Assigning to "1.10.10.60" based on similarity with "1w0uB00"

Flow stage update by auto on 15 Aug 2007 01:24

No in_process hits for Domain "1w0uA00" ready to be processed

Update comment by auto on 14 Aug 2007 23:57

Domain "1w0uA00" hits Domain "1w0uB00" (100% over 100%) which is currently in process

Update comment by auto on 14 Aug 2007 22:46

Domain "1w0uA00" hits Domain "1vfcA00" (100% over 87.3015873015873%) which is currently in process

Flow stage update by auto on 19 Jul 2007 15:09

Domain "1w0uA00" hits Domain "1vf9A00" (100% over 85.9375%) which is currently in process

Flow stage update by auto on 19 Jul 2007 15:09

NW result present for Domain "1w0uA00"

Flow stage update by auto on 16 Jul 2007 22:37

All required files are present for Domain "1w0uA00"

Flow stage update by auto on 14 Jul 2007 12:51

Beginning processing for Domain "1w0uA00"

Insertion by auto on 14 Jul 2007 10:13

Final ChopClose added based on similarity with "1vfcA"