CATH Domain: 1vq8S00 XML data for domain: 1vq8S00

Molscript image for 1vq8S00
1vq8S00
PDB coordinates for domain 1vq8S00

PDB 1vq8, Chain S, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.16
3.30.70.330.16.1
3.30.70.330.16.1.1
3.30.70.330.16.1.1.1
3.30.70.330.16.1.1.1.1

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Segment boundaries for domain 1vq8S00

Chopping figure for domain 1vq8S00
DomainStart PDB ResidueStop PDB Residue
1vq8S00 1 81

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.30.70.330.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2j01X00 84.77 RibosomeThermus thermophilus HB8Large subunit ribosomal protein L2350S ribosomal protein L23 3.30.70.330 92 25 84 2.36 2.78
1x5uA01 80.44 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 7 74 3.39 4.58
2do0A01 79.75 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 10 71 3.41 4.76
1x5oA01 78.75 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 7 69 3.35 4.80
2zfzF00 78.60 Transcriptional regulator of arginine metabolismArginine repressorMycobacterium tuberculosis 3.30.1360.40 76 7 77 3.88 4.99
2u2fA00 78.56 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 6 69 2.91 4.19
1no8A00 78.16 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 10 66 3.21 4.81
1jmtA00 76.98 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 13 61 3.04 4.97
2rhsD06 76.53 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 8 70 3.51 4.98
2ey4C00 75.73 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 6 85 3.99 4.68
1xrsB01 74.85 Clostridium sticklandiiD-lysine 5,6-aminomutase beta subunitProtein binding 3.30.30.60 52 13 60 2.84 4.69
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vq8S00
SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR
I
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vq8S00
MSWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS
RIGVF
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:35

Assigning to "3.30.70.330" based on similarity with "1s72S00" (NWSI: 100, NWO: 100, SPS: 99.11, SPO: 100, RMSD: 0.19)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1vq8S00"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1vq8S00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1vq8S00"

Insertion by auto on 09 Mar 2006 23:03

Final ChopClose added based on similarity with "1s72S" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 99.11, SI: 100, SO: 100]