CATH Domain: 1vq8E02 XML data for domain: 1vq8E02

Molscript image for 1vq8E02
1vq8E02
PDB coordinates for domain 1vq8E02

PDB 1vq8, Chain E, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.930 Outer Surface Protein A; domain 3
3.90.930.12 Gene3D
3.90.930.12.4
3.90.930.12.4.1
3.90.930.12.4.1.1
3.90.930.12.4.1.1.1
3.90.930.12.4.1.1.1.1

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Segment boundaries for domain 1vq8E02

Chopping figure for domain 1vq8E02
DomainStart PDB ResidueStop PDB Residue
1vq8E01 1 79
1vq8E02 80 172

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.90.930.12.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3i1nG01 81.83 RibosomeLarge subunit ribosomal protein L650S ribosomal protein L6Protein bindingEscherichia coli K-12 3.90.930.12 81 13 78 3.08 3.92
2epiB00 77.03 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 8 72 3.58 4.91
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vq8E02
WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDV
RVFQDGVYITRKP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vq8E02
WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDV
RVFQDGVYITRKPNRGDA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:37

Assigning to "3.90.930.12" based on similarity with "1m1kG01" (NWSI: 100, NWO: 100, SPS: 98.53, SPO: 100, RMSD: 0.23)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1vq8E02"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "1vq8E02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1vq8E02"

Insertion by auto on 09 Mar 2006 23:04

Final ChopClose added based on similarity with "1s72E" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 97.98, SI: 100, SO: 100]