CATH Domain: 1vpdA01 XML data for domain: 1vpdA01

Molscript image for 1vpdA01
1vpdA01
PDB coordinates for domain 1vpdA01

PDB 1vpd, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.90
3.40.50.720.90.1
3.40.50.720.90.1.1
3.40.50.720.90.1.1.1
3.40.50.720.90.1.1.1.1

Segment boundaries for domain 1vpdA01

Chopping figure for domain 1vpdA01
DomainStart PDB ResidueStop PDB Residue
1vpdA01 4 165
1vpdA02 166 296

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 3.40.50.720.90.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ckyA01 91.64 Eubacterium barkeri2-hydroxymethyl glutarate dehydrogenase 3.40.50.720 163 37 93 1.35 1.44
2cvzA01 91.63 Valine, leucine and isoleucine degradationMetabolic pathwaysThermus thermophilus HB83-hydroxyisobutyrate dehydrogenase3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] 3.40.50.720 153 37 95 1.15 1.20
1i36A01 82.93 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.720 159 19 88 2.23 2.51
2rcyA01 82.45 Arginine and proline metabolismMetabolic pathwaysPlasmodium falciparum 3D7Pyrroline carboxylate reductasePyrroline-5-carboxylate reductase [EC:1.5.1.2] 3.40.50.720 148 16 85 2.55 3.00
2amfA01 82.37 Arginine and proline metabolismMetabolic pathwaysPutative pyrroline carboxylate reductasePyrroline-5-carboxylate reductase [EC:1.5.1.2]Streptococcus pyogenes serotype M1 3.40.50.720 148 16 90 2.58 2.86
3d1lB01 80.30 Bacteroides fragilis NCTC 9343Putative uncharacterized protein 3.40.50.720 151 11 89 2.75 3.07
2pv7A01 79.90 T-proteinNovobiocin biosynthesisHaemophilus influenzaePhenylalanine, tyrosine and tryptophan biosynthesisPrephenate dehydrogenase [EC:1.3.1.12] 3.40.50.720 154 14 85 2.97 3.46
1oi7A01 79.34 Succinyl-CoA ligase [ADP-forming] subunit alphaThermus thermophilus 3.40.50.720 122 16 68 2.75 4.03
1o6zA02 78.88 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismHaloarcula marismortuiMetabolic pathways 3.40.50.720 142 12 68 2.47 3.62
2aefA01 78.18 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 13 66 2.60 3.89
1pl8A02 78.03 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 12 68 3.00 4.40
3d0oA01 77.91 Pyruvate metabolismPropanoate metabolismMetabolic pathwaysCysteine and methionine metabolismGlycolysis / Gluconeogenesis 3.40.50.720 143 9 68 2.45 3.59
2ew2B01 77.87 2-dehydropantoate 2-reductase [EC:1.1.1.169]Pantothenate and CoA biosynthesis2-dehydropantoate 2-reductaseMetabolic pathwaysEnterococcus faecalis 3.40.50.720 174 16 83 3.79 4.55
1lluA02 77.55 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 10 66 2.73 4.12
1ur5C01 77.41 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 9 69 2.51 3.61
1hyhA01 77.34 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 16 69 2.63 3.79
3ff4A00 77.04 Cytophaga hutchinsonii ATCC 33406Putative uncharacterized protein 3.40.50.720 119 14 70 3.30 4.71
1li4A02 76.97 Selenoamino acid metabolismMetabolic pathwaysCysteine and methionine metabolismAdenosylhomocysteinaseAdenosylhomocysteinase [EC:3.3.1.1] 3.40.50.720 160 10 70 3.48 4.93
2i76A01 76.88 Thermotoga maritimaPutative uncharacterized protein 3.40.50.720 142 14 88 3.62 4.10
1xeaA01 76.70 Vibrio choleraeOxidoreductase, Gfo/Idh/MocA familyVirulence factor 3.40.50.720 117 12 67 2.85 4.22
1h2bA02 76.67 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 10 68 3.23 4.74
2eggA02 76.48 Shikimate 5-dehydrogenase [EC:1.1.1.25]Geobacillus kaustophilusPhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenaseMetabolic pathways 3.40.50.720 140 14 68 2.72 3.99
1hyeA01 76.37 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 13 72 3.19 4.43
1piwA02 75.81 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 14 69 3.34 4.81
1f8fA02 75.75 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 7 66 2.90 4.38
2ho3A01 75.74 Oxidoreductase, Gfo/Idh/MocA familyStreptococcus pneumoniae 3.40.50.720 113 11 64 2.78 4.32
1ydwA01 75.15 Arabidopsis thalianaUncharacterized oxidoreductase At4g09670 3.40.50.720 124 13 70 3.01 4.25
2qytA01 74.97 Porphyromonas gingivalis2-dehydropantoate 2-reductase 3.40.50.720 179 12 79 3.87 4.84
1p3dA01 74.94 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 20 53 2.46 4.62
3a06B01 74.20 Terpenoid backbone biosynthesisThermotoga maritima1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Metabolic pathways 3.40.50.720 141 13 69 3.15 4.53
1j6uA01 73.48 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 17 52 2.48 4.72
2c82A01 73.18 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 3.40.50.720 141 7 68 3.39 4.97
Displaying entries 1 to 32 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vpdA01
KVGFIGLGIGKPSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITLPNSPHVKEVALGENGIIEGA
KPGTVLIDSSIAPLASREISDALKAKGVELDAPVSGGEPKAIDGTLSVVGGDKAIFDKYYDLKAAGSVVHTGDI    

Domain COMBS Sequence

>pdb|1vpdA01
SNAMTXKVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITXLPNSPHVKEVAL
GENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAG
SVVHTGDI    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:09

Cut based on decision in database "DomChop" on "cathdb"