CATH Domain: 1vp6A00 XML data for domain: 1vp6A00

Molscript image for 1vp6A00
1vp6A00
PDB coordinates for domain 1vp6A00

PDB 1vp6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.10 Jelly Rolls Gene3D
2.60.120.10.17
2.60.120.10.17.1
2.60.120.10.17.1.1
2.60.120.10.17.1.1.1
2.60.120.10.17.1.1.1.1

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Segment boundaries for domain 1vp6A00

Chopping figure for domain 1vp6A00
DomainStart PDB ResidueStop PDB Residue
1vp6A00 218 350

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.60.120.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bpzA02 90.36 Mus musculusHyperpolarization activated cyclic nucleotide-gated potassium channel 2Regulation of membrane potentialPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 2.60.120.10 127 30 92 1.87 2.02
1ne6A02 87.82 Insulin signaling pathwayApoptosisBos taurusCAMP-dependent protein kinase regulatorProtein binding 2.60.120.10 142 24 90 2.25 2.50
2gauA01 87.81 Transcriptional regulator, Crp/Fnr familyPorphyromonas gingivalis 2.60.120.10 137 15 89 2.14 2.40
1hw5A01 85.68 TranscriptionTranscription activator activityTranscription repressor activityCRP/FNR family transcriptional regulator, cyclic AMP receptor proteinCatabolite gene activator 2.60.120.10 129 19 81 2.60 3.17
1o7fA03 85.08 Ras guanyl-nucleotide exchange factor activityCAMP-mediated signalingCytosolMus musculusRap guanine nucleotide exchange factor 4 2.60.120.10 109 22 78 3.54 4.53
1o7fA01 84.80 Ras guanyl-nucleotide exchange factor activityCAMP-mediated signalingCytosolMus musculusRap guanine nucleotide exchange factor 4 2.60.120.10 155 23 83 3.14 3.74
1o5lA00 84.07 Thermotoga maritimaTranscriptional regulator, crp family 2.60.120.10 129 14 81 2.48 3.03
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vp6A00
VRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFG
EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vp6A00
VRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFG
EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAASA
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:09

Cut based on decision in database "DomChop" on "cathdb"